Tableau information
Concept source: d4l6pa1 amino acid (a.a.) range (MET1)(GLY53)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(MET1) (PHE6) E1
(LEU11) (VAL23) H2
(VAL26) (LYS31) E3
(GLY34) (VAL40) E4
(LEU47) (GLY53) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 101.8° H2
E3 108.7° 136.3° E3
E4 -81.8° 21.4° 154.1° E4
E5 95.2° -162.8° -31.7° 174.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4gd9b_ : (SER122) (SER245) [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |automated matches |Streptomyces avidinii [TaxId: 1895]
d1b0ma1 : (GLY676) (THR730) [view usage] : c.8.2.1 |The "swivelling" beta/beta/alpha domain |LeuD/IlvD-like |LeuD-like |Aconitase A, C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d1swgc_ : (SER122) (SER45) [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |Streptavidin |Streptomyces avidinii [TaxId: 1895]
d1t6la1 : (PRO77) (HIS131) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |UL44 |Human cytomegalovirus, HHV-5 [TaxId: 10359]
d4tr8b2 : (ASP190) (LYS236) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 983919]
d3f1wa2 : (ASP204) (ALA251) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4l6pa2 : (ASP204) (ALA251) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d3v62b2 : (SER135) (LYS183) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d3v62b2 : (PRO202) (ALA251) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d3gpna2 : (PRO202) (ALA251) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1b77a2 : (VAL114) (THR170) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |gp45 sliding clamp |Bacteriophage RB69 [TaxId: 12353]
d1yypa1 : (PRO77) (HIS131) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |UL44 |Human cytomegalovirus, HHV-5 [TaxId: 10359]
d3v60b2 : (PRO202) (ALA251) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1plqa2 : (PRO202) (ALA251) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2io4b2 : (PRO130) (THR180) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 273057]
d1vpka2 : (GLU188) (ARG234) [view usage] : d.131.1.1 |DNA clamp |DNA clamp |DNA polymerase III, beta subunit |DNA polymerase III, beta subunit |Thermotoga maritima [TaxId: 2336]
d5acna1 : (GLY676) (THR730) [view usage] : c.8.2.1 |The "swivelling" beta/beta/alpha domain |LeuD/IlvD-like |LeuD-like |Aconitase A, C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d2jvva_ : (GLU132) (GLU172) [view usage] : b.34.5.4 |SH3-like barrel |Translation proteins SH3-like domain |N-utilization substance G protein NusG, C-terminal domain |N-utilization substance G protein NusG, C-terminal domain |Escherichia coli [TaxId: 562]
d1sxjh2 : (ASP134) (LYS183) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4l60a2 : (PRO202) (ALA251) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d2xura2 : (HIS191) (ARG240) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1jqja2 : (HIS191) (ARG240) [view usage] : d.131.1.1 |DNA clamp |DNA clamp |DNA polymerase III, beta subunit |DNA polymerase III, beta subunit |Escherichia coli [TaxId: 562]
d4l6pc2 : (PRO202) (ALA251) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.8, d.131, b.34, b.61