Tableau information
Concept source: d1kyta_ amino acid (a.a.) range (THR37)(PHE81)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR37) (GLY43) E1
(VAL45) (ILE54) H2
(GLY60) (GLY64) E3
(GLY68) (ASP72) E4
(GLY75) (PHE81) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 149.4° H2
E3 -3.2° 152.6° E3
E4 146.8° -35.9° 147.9° E4
E5 -46.8° 144.3° -44.9° 162.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2yxeb_ : (ASP148) (ASP198) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d1p9ba_ : (VAL16) (HIS66) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1cg4a_ : (ASN2) (HIS53) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Escherichia coli [TaxId: 562]
d1cg1a_ : (ASN2) (HIS53) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Escherichia coli [TaxId: 562]
d1x9ya2 : (GLN42) (SER118) [view usage] : d.17.1.4 |Cystatin-like |Cystatin/monellin |Staphopain B, prodomain |Staphopain B, prodomain |Staphylococcus aureus [TaxId: 1280]
d1wdja_ : (LYS112) (GLY166) [view usage] : c.52.1.27 |Restriction endonuclease-like |Restriction endonuclease-like |Hypothetical protein TT1808 (TTHA1514) |Hypothetical protein TT1808 (TTHA1514) |Thermus thermophilus [TaxId: 274]
d2a22b_ : (LYS96) (GLY148) [view usage] : d.159.1.7 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |YfcE-like |Vacuolar protein sorting 29, VPS29 |Cryptosporidium parvum [TaxId: 5807]
d1m1jb1 : (VAL210) (ILE257) [view usage] : d.171.1.1 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domains |Chicken (Gallus gallus), beta [TaxId: 9031]
d1gxla_ : (ASN616) (ARG657) [view usage] : d.215.1.1 |Smc hinge domain |Smc hinge domain |Smc hinge domain |Smc hinge domain |Thermotoga maritima [TaxId: 2336]
d3qhyb_ : (SER43) (GLY88) [view usage] : b.69.5.2 |7-bladed beta-propeller |RCC1/BLIP-II |beta-lactamase inhibitor protein-II, BLIP-II |automated matches |Streptomyces exfoliatus [TaxId: 1905]
d1cg3a_ : (ASN2) (HIS53) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Escherichia coli [TaxId: 562]
d2rj6a_ : (ASN113) (TYR178) [view usage] : c.68.1.9 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |alpha-1,3-galactosyltransferase-like |Glycosyltransferase A catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d2z1ma_ : (GLY248) (GLU293) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Aquifex aeolicus [TaxId: 224324]
d1fzab1 : (VAL205) (ILE252) [view usage] : d.171.1.1 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domains |Human (Homo sapiens), beta [TaxId: 9606]
d1wdjb_ : (LYS112) (GLY166) [view usage] : c.52.1.27 |Restriction endonuclease-like |Restriction endonuclease-like |Hypothetical protein TT1808 (TTHA1514) |Hypothetical protein TT1808 (TTHA1514) |Thermus thermophilus [TaxId: 274]
d1lwub1 : (VAL226) (VAL273) [view usage] : d.171.1.1 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domains |Sea lamprey (Petromyzon marinus), beta [TaxId: 7757]
d1v8ga2 : (VAL189) (PRO242) [view usage] : c.27.1.1 |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Anthranilate phosphoribosyltransferase (TrpD) |Thermus thermophilus [TaxId: 274]
d1gxld_ : (ASN616) (ARG657) [view usage] : d.215.1.1 |Smc hinge domain |Smc hinge domain |Smc hinge domain |Smc hinge domain |Thermotoga maritima [TaxId: 2336]
d2riza_ : (ASN113) (TYR178) [view usage] : c.68.1.9 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |alpha-1,3-galactosyltransferase-like |Glycosyltransferase A catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d3oojf2 : (PRO515) (GLU563) [view usage] : c.80.1.1 |SIS domain |SIS domain |double-SIS domain |automated matches |Escherichia coli [TaxId: 562]
d3nqyb_ : (PRO264) (ASP329) [view usage] : d.92.1.2 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Thermolysin-like |automated matches |Pseudoalteromonas sp. [TaxId: 234831]
d2j4ga3 : (TYR25) (ASP96) [view usage] : d.92.2.3 |Zincin-like |beta-N-acetylhexosaminidase-like domain |Hyaluronidase N-terminal domain-like |Glucosaminidase GH84, N-terminal domain |Bacteroides thetaiotaomicron [TaxId: 818]
d3oojc2 : (PRO515) (GLU563) [view usage] : c.80.1.1 |SIS domain |SIS domain |double-SIS domain |automated matches |Escherichia coli [TaxId: 562]
d4qeac_ : (ARG2) (ARG65) [view usage] : c.106.1.0 |SurE-like |SurE-like |automated matches |automated matches |Brucella abortus [TaxId: 430066]
d2a22a1 : (LYS96) (GLY148) [view usage] : d.159.1.7 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |YfcE-like |Vacuolar protein sorting 29, VPS29 |Cryptosporidium parvum [TaxId: 5807]
d1re3b1 : (VAL205) (ILE252) [view usage] : d.171.1.1 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domains |Human (Homo sapiens), beta [TaxId: 9606]
d1kyta_ : (THR37) (PHE81) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Phosphoglycolate phosphatase, PGPase |Thermoplasma acidophilum [TaxId: 2303]
d3qi0c_ : (THR42) (GLY88) [view usage] : b.69.5.2 |7-bladed beta-propeller |RCC1/BLIP-II |beta-lactamase inhibitor protein-II, BLIP-II |automated matches |Streptomyces exfoliatus [TaxId: 1905]
d1qjva_ : (ASN29) (GLU84) [view usage] : b.80.1.5 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectin methylesterase |Pectin methylesterase PemA |Erwinia chrysanthemi [TaxId: 556]
d1m1je1 : (VAL210) (ILE257) [view usage] : d.171.1.1 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domains |Chicken (Gallus gallus), beta [TaxId: 9031]
d1i1na_ : (ASP153) (PRO206) [view usage] : c.66.1.7 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Protein-L-isoaspartyl O-methyltransferase |Protein-L-isoaspartyl O-methyltransferase |Human (Homo sapiens) [TaxId: 9606]
d3lx2b2 : (THR131) (MET181) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Thermococcus kodakarensis [TaxId: 311400]
d1kr5a_ : (ASP153) (PRO206) [view usage] : c.66.1.7 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Protein-L-isoaspartyl O-methyltransferase |Protein-L-isoaspartyl O-methyltransferase |Human (Homo sapiens) [TaxId: 9606]
d2g3wa1 : (ALA23) (LEU84) [view usage] : c.52.1.33 |Restriction endonuclease-like |Restriction endonuclease-like |YaeQ-like |Hypothetical protein XAC2396 |Xanthomonas axonopodis pv. citri [TaxId: 92829]
d1nija2 : (SER226) (TRP284) [view usage] : d.237.1.1 |Hypothetical protein YjiA, C-terminal domain |Hypothetical protein YjiA, C-terminal domain |Hypothetical protein YjiA, C-terminal domain |Hypothetical protein YjiA, C-terminal domain |Escherichia coli [TaxId: 562]
d1n86b1 : (VAL205) (ILE252) [view usage] : d.171.1.1 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domains |Human (Homo sapiens), beta [TaxId: 9606]
d1l6ra_ : (THR37) (PHE81) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |Phosphoglycolate phosphatase, PGPase |Thermoplasma acidophilum [TaxId: 2303]
d4v1aa_ : (PRO286) (ASP377) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d1egme_ : (LYS101) (GLN156) [view usage] : c.51.3.1 |Anticodon-binding domain-like |B12-dependent dehydatase associated subunit |Diol dehydratase, beta subunit |Diol dehydratase, beta subunit |Klebsiella oxytoca [TaxId: 571]
d3qi0f_ : (THR42) (GLY88) [view usage] : b.69.5.2 |7-bladed beta-propeller |RCC1/BLIP-II |beta-lactamase inhibitor protein-II, BLIP-II |automated matches |Streptomyces exfoliatus [TaxId: 1905]
d2r17a_ : (LYS81) (GLY133) [view usage] : d.159.1.7 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |YfcE-like |Vacuolar protein sorting 29, VPS29 |Human (Homo sapiens) [TaxId: 9606]
d4qead_ : (ARG2) (ARG65) [view usage] : c.106.1.0 |SurE-like |SurE-like |automated matches |automated matches |Brucella abortus [TaxId: 430066]
d1u25c_ : (HIS90) (GLY139) [view usage] : c.45.1.4 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA |Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA |Selenomonas ruminantium [TaxId: 971]
d1abra_ : (ILE5) (GLY81) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Abrin A-chain |Abrus precatorius [TaxId: 3816]
d1eexb_ : (LYS101) (GLN156) [view usage] : c.51.3.1 |Anticodon-binding domain-like |B12-dependent dehydatase associated subunit |Diol dehydratase, beta subunit |Diol dehydratase, beta subunit |Klebsiella oxytoca [TaxId: 571]
d1vr9a3 : (PHE11) (GLU76) [view usage] : d.37.1.1 |CBS-domain pair |CBS-domain pair |CBS-domain pair |Hypothetical protein TM0892, CBS tandem |Thermotoga maritima [TaxId: 2336]
d1luia_ : (TRP11) (THR69) [view usage] : d.93.1.1 |SH2-like |SH2 domain |SH2 domain |Itk/tsk protein tyrosine kinase |Mouse (Mus musculus) [TaxId: 10090]
d1gxja_ : (GLY615) (ARG657) [view usage] : d.215.1.1 |Smc hinge domain |Smc hinge domain |Smc hinge domain |Smc hinge domain |Thermotoga maritima [TaxId: 2336]
d2czra1 : (VAL40) (THR85) [view usage] : c.52.4.1 |Restriction endonuclease-like |TBP-interacting protein-like |TBP-interacting protein-like |TBP-interacting protein |Thermococcus kodakaraensis [TaxId: 311400]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.80, c.2, d.159, b.69, i.1, c.68, c.108, c.66, c.80, d.92, c.45, d.165, c.37, d.171, d.17, d.37, c.51, d.131, c.52, d.93,
c.27, c.106, d.215, d.237