Tableau information
Concept source: d1owta_ amino acid (a.a.) range (CYS133)(PRO188)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(CYS133) (ASP142) E1
(THR146) (SER162) H2
(SER162) (HIS166) E3
(HIS166) (LEU172) E4
(ARG180) (PRO188) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 133.6° H2
E3 -80.0° 144.4° E3
E4 -21.7° 134.2° -71.3° E4
E5 161.4° -33.1° 116.9° 165.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1vk3a2 : (LEU438) (LYS501) [view usage] : d.79.4.1 |Bacillus chorismate mutase-like |PurM N-terminal domain-like |PurM N-terminal domain-like |Phosphoribosylformylglycinamidine synthase II, domains 1 and 3 |Thermotoga maritima [TaxId: 2336]
d3pnla_ : (GLY275) (LYS334) [view usage] : c.119.1.2 |DAK1/DegV-like |DAK1/DegV-like |DAK1 |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4gvja_ : (THR923) (GLU979) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1p9qc3 : (GLU162) (PRO206) [view usage] : d.58.11.3 |Ferredoxin-like |EF-G C-terminal domain-like |Hypothetical protein AF0491, C-terminal domain |Hypothetical protein AF0491, C-terminal domain |Archaeoglobus fulgidus [TaxId: 2234]
d1u55b_ : (ASP125) (LYS179) [view usage] : d.278.1.1 |Ligand-binding domain in the NO signalling and Golgi transport |Ligand-binding domain in the NO signalling and Golgi transport |H-NOX domain |Methyl-accepting chemotaxis protein |Thermoanaerobacter tengcongensis [TaxId: 119072]
d2fkla_ : (LYS134) (PRO188) [view usage] : d.230.3.1 |Dodecin subunit-like |Amyloid beta a4 protein copper binding domain (domain 2) |Amyloid beta a4 protein copper binding domain (domain 2) |Amyloid beta a4 protein copper binding domain (domain 2) |Human (Homo sapiens) [TaxId: 9606]
d2ey4a2 : (ALA109) (VAL177) [view usage] : d.265.1.2 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase II TruB |Pseudouridine synthase II TruB |Pyrococcus furiosus [TaxId: 2261]
d1eiyb4 : (HIS690) (HIS751) [view usage] : d.58.13.1 |Ferredoxin-like |Anticodon-binding domain of PheRS |Anticodon-binding domain of PheRS |Phenylalanyl-tRNA synthetase |Thermus thermophilus [TaxId: 274]
d2ek1d_ : (THR876) (GLU925) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2hrua2 : (LEU438) (VAL502) [view usage] : d.79.4.1 |Bacillus chorismate mutase-like |PurM N-terminal domain-like |PurM N-terminal domain-like |Phosphoribosylformylglycinamidine synthase II, domains 1 and 3 |Thermotoga maritima [TaxId: 2336]
d3pnka_ : (GLY275) (ASP337) [view usage] : c.119.1.2 |DAK1/DegV-like |DAK1/DegV-like |DAK1 |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3cc2m1 : (VAL60) (ASN137) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Prokaryotic (50S subunit) |Haloarcula marismortui [TaxId: 2238]
d2vkfa1 : (VAL2) (GLU61) [view usage] : d.230.2.1 |Dodecin subunit-like |Dodecin-like |Dodecin-like |Flavin-binding protein dodecin |Halobacterium salinarum [TaxId: 2242]
d1zpvb_ : (ALA-1) (ASP51) [view usage] : d.58.18.7 |Ferredoxin-like |ACT-like |SP0238-like |UPF0237 protein SP0238 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1owta_ : (CYS133) (PRO188) [view usage] : d.230.3.1 |Dodecin subunit-like |Amyloid beta a4 protein copper binding domain (domain 2) |Amyloid beta a4 protein copper binding domain (domain 2) |Amyloid beta a4 protein copper binding domain (domain 2) |Human (Homo sapiens) [TaxId: 9606]
d2m05a_ : (ALA134) (PRO196) [view usage] : d.230.3.0 |Dodecin subunit-like |Amyloid beta a4 protein copper binding domain (domain 2) |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d2ey4b2 : (ALA109) (VAL177) [view usage] : d.265.1.2 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase II TruB |Pseudouridine synthase II TruB |Pyrococcus furiosus [TaxId: 2261]
d4lrya_ : (GLY275) (LYS334) [view usage] : c.119.1.2 |DAK1/DegV-like |DAK1/DegV-like |DAK1 |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3v2cy_ : (THR2) (PRO57) [view usage] : d.204.1.1 |Ribosome binding protein Y (YfiA homologue) |Ribosome binding protein Y (YfiA homologue) |Ribosome binding protein Y (YfiA homologue) |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2fyxa1 : (LYS10) (THR66) [view usage] : d.58.57.1 |Ferredoxin-like |Transposase IS200-like |Transposase IS200-like |Putative transposase DR0177 |Deinococcus radiodurans [TaxId: 1299]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.58, i.1, d.144, d.278, d.79, c.119, d.265, d.230, d.204