Tableau information
Concept source: d4k3la3 amino acid (a.a.) range (LYS254)(LEU306)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EHEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS254) (ALA258) E1
(GLY259) (ALA271) H2
(ARG279) (VAL285) E3
(ASN288) (PRO297) E4
(GLU300) (LEU306) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 93.2° H2
E3 107.2° 132.2° E3
E4 -84.7° -21.3° 153.4° E4
E5 91.1° -169.5° -37.4° 169.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2io4d2 : (ASP192) (ALA242) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 273057]
d4cs5b2 : (ALA134) (SER187) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Pacific white shrimp (Litopenaeus vannamei) [TaxId: 6689]
d4cs5b2 : (GLU201) (ALA252) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Pacific white shrimp (Litopenaeus vannamei) [TaxId: 6689]
d1vpka3 : (VAL315) (ALA366) [view usage] : d.131.1.1 |DNA clamp |DNA clamp |DNA polymerase III, beta subunit |DNA polymerase III, beta subunit |Thermotoga maritima [TaxId: 2336]
d1czda2 : (ALA1114) (THR1168) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |gp45 sliding clamp |Bacteriophage T4 [TaxId: 10665]
d1czda1 : (PHE1050) (PRO1093) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |gp45 sliding clamp |Bacteriophage T4 [TaxId: 10665]
d2ijxa2 : (ASP129) (SER177) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 273057]
d1vyjg2 : (SER134) (LEU182) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Human (Homo sapiens) [TaxId: 9606]
d3f1wa2 : (ASP134) (LYS183) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4cs5a2 : (ALA134) (SER187) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Pacific white shrimp (Litopenaeus vannamei) [TaxId: 6689]
d1vyma2 : (SER134) (ASP189) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Human (Homo sapiens) [TaxId: 9606]
d4l6pa2 : (ASP134) (ASP187) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d3v61b2 : (ASP134) (LYS183) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d3v61b2 : (PRO202) (ALA251) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d3f1va2 : (SER190) (LYS235) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Escherichia coli [TaxId: 562]
d2hiib2 : (PRO130) (SER179) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 2287]
d1rwza2 : (PRO128) (HIS175) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Archaeoglobus fulgidus [TaxId: 2234]
d3p83c2 : (PRO128) (HIS175) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d3gpna2 : (ASP134) (LYS183) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1b77a2 : (ASN177) (ALA219) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |gp45 sliding clamp |Bacteriophage RB69 [TaxId: 12353]
d3v60b2 : (SER135) (LYS183) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1rxma2 : (PRO128) (HIS175) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Archaeoglobus fulgidus [TaxId: 2234]
d1plqa2 : (ASP134) (LYS183) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3aixa2 : (PRO129) (SER179) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 273063]
d1sxjf2 : (ASP134) (LYS183) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1sxjf2 : (PRO202) (ASP256) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1vyja2 : (SER134) (SER183) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Human (Homo sapiens) [TaxId: 9606]
d1vyja2 : (PRO202) (ALA252) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Human (Homo sapiens) [TaxId: 9606]
d2hiic2 : (ASP129) (PHE176) [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 2287]
d1ul1c2 : (SER134) (LEU182) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Human (Homo sapiens) [TaxId: 9606]
d1sxjh2 : (PRO202) (ALA251) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4l60a2 : (ASP134) (PRO184) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1ul1b2 : (SER134) (SER183) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Human (Homo sapiens) [TaxId: 9606]
d1ul1b2 : (PRO202) (ALA252) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Human (Homo sapiens) [TaxId: 9606]
d2od8a2 : (ASP134) (LYS183) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ud9a2 : (ASP129) (SER177) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Sulfolobus tokodaii [TaxId: 111955]
d1jqja1 : (PRO65) (SER109) [view usage] : d.131.1.1 |DNA clamp |DNA clamp |DNA polymerase III, beta subunit |DNA polymerase III, beta subunit |Escherichia coli [TaxId: 562]
d1sxjf1 : (MSE1) (VAL54) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1sxjf1 : (HIS64) (ASP122) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4l6pc2 : (ASP134) (LYS183) [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.131