Tableau information
Concept source: d2acld_ amino acid (a.a.) range (GLU309)(PHE363)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU309) (LEU314) E1
(ASP316) (ARG321) E2
(ARG321) (ALA327) H3
(VAL331) (GLN348) H4
(ASN350) (PHE363) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 137.8° E2
H3 57.7° -81.8° H3
H4 88.8° -123.3° 141.8° H4
H5 -84.3° 54.2° -37.5° 132.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3b0wa_ : (ARG374) (LEU425) [view usage] : a.123.1.0 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4qm0a_ : (ARG374) (LEU425) [view usage] : a.123.1.0 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3p2ca_ : (THR89) (ASP171) [view usage] : a.102.1.8 |alpha/alpha toroid |Six-hairpin glycosidases |CPF0428-like |automated matches |Bacteroides ovatus [TaxId: 411476]
d3b0wb_ : (ARG374) (LEU425) [view usage] : a.123.1.0 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1vw4h_ : (TYR77) (ARG125) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Saccharomyces cerevisiae [TaxId: 4932]
d3v3qb1 : (GLY129) (LEU180) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Orphan nuclear receptor NR4A1 |Human (Homo sapiens) [TaxId: 9606]
d1xnxa_ : (GLU225) (LEU277) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Orphan nuclear receptor NR1I3 (CAR) |Mouse (Mus musculus) [TaxId: 10090]
d4v19n_ : (LYS75) (GLN123) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d3if6b_ : (GLN93) (ILE144) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d3lbda_ : (ASP284) (LEU336) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Retinoic acid receptor gamma (RAR-gamma) |Human (Homo sapiens) [TaxId: 9606]
d3nsqb_ : (GLY323) (PHE376) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Retinoid-X receptor alpha (RXR-alpha) |Human (Homo sapiens) [TaxId: 9606]
d2hgjm1 : (GLN69) (ARG119) [view usage] : c.21.1.1 |Ribosomal protein L13 |Ribosomal protein L13 |Ribosomal protein L13 |Ribosomal protein L13 |Thermus thermophilus [TaxId: 274]
d1tfcb_ : (ASP322) (SER377) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Orphan nuclear receptor ERR3 |Human (Homo sapiens) [TaxId: 9606]
d2fb2b_ : (THR265) (ARG328) [view usage] : c.1.28.3 |TIM beta/alpha-barrel |Radical SAM enzymes |MoCo biosynthesis proteins |Molybdenum cofactor biosynthesis protein A MoaA |Staphylococcus aureus [TaxId: 1280]
d3bbol1 : (LYS171) (LEU221) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, chloroplast (70S ribosome functional complex) |Spinach (Spinacia oleracea) [TaxId: 3562]
d3sn9a_ : (ASP63) (ASN128) [view usage] : a.265.1.1 |Fic-like |Fic-like |Fic-like |automated matches |Neisseria meningitidis [TaxId: 491]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.1, i.1, a.102, a.123, a.265, c.21