Tableau information
Concept source: d2w1va_ amino acid (a.a.) range (PHE176)(GLY215)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEHHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PHE176) (PRO182) E1
(CYS184) (ILE190) E2
(ILE190) (PHE196) H3
(GLU198) (GLY207) H4
(GLN209) (GLY215) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 147.7° E2
H3 -99.9° 105.0° H3
H4 -36.5° 164.1° -85.0° H4
E5 124.6° -24.0° -127.2° 147.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1t0fa2 : (LEU116) (THR164) [view usage] : c.52.1.16 |Restriction endonuclease-like |Restriction endonuclease-like |TnsA endonuclease, N-terminal domain |TnsA endonuclease, N-terminal domain |Escherichia coli [TaxId: 562]
d1zbra1 : (ALA149) (LEU195) [view usage] : d.126.1.6 |Pentein, beta/alpha-propeller |Pentein |Porphyromonas-type peptidylarginine deiminase |Putative peptidyl-arginine deiminase |Porphyromonas gingivalis [TaxId: 837]
d2w1va_ : (PHE176) (GLY215) [view usage] : d.160.1.0 |Carbon-nitrogen hydrolase |Carbon-nitrogen hydrolase |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2bhna2 : (ASP52) (VAL96) [view usage] : c.52.1.20 |Restriction endonuclease-like |Restriction endonuclease-like |XPF/Rad1/Mus81 nuclease |XPF endonuclease |Aeropyrum pernix [TaxId: 56636]
d2b7kb_ : (GLY171) (THR208) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thioredoxin-like protein Sco1 (YpmQ), soluble domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3qfna_ : (LEU113) (HIS164) [view usage] : d.159.1.0 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 171101]
d2wkfa_ : (TYR37) (ASP101) [view usage] : d.80.1.0 |Tautomerase/MIF |Tautomerase/MIF |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d2eb0b_ : (MET201) (ILE253) [view usage] : c.107.1.0 |DHH phosphoesterases |DHH phosphoesterases |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d1emsa2 : (PRO155) (SER193) [view usage] : d.160.1.1 |Carbon-nitrogen hydrolase |Carbon-nitrogen hydrolase |Nitrilase |NIT-FHIT fusion protein, N-terminal domain |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d3rrvb_ : (ASP9) (GLY58) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium avium [TaxId: 1770]
d2bgwb2 : (ASP52) (VAL96) [view usage] : c.52.1.20 |Restriction endonuclease-like |Restriction endonuclease-like |XPF/Rad1/Mus81 nuclease |XPF endonuclease |Aeropyrum pernix [TaxId: 56636]
d1ztcb_ : (GLU143) (PRO198) [view usage] : d.157.1.11 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |TM0894-like |Hypothetical protein TM0894 |Thermotoga maritima [TaxId: 2336]
d2ggla1 : (PRO158) (HIS201) [view usage] : d.160.1.2 |Carbon-nitrogen hydrolase |Carbon-nitrogen hydrolase |Carbamilase |N-carbamoyl-D-aminoacid amidohydrolase |Agrobacterium radiobacter [TaxId: 358]
d1d5ta2 : (ILE332) (GLU388) [view usage] : d.16.1.6 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |GDI-like |Guanine nucleotide dissociation inhibitor, GDI |Cow (Bos taurus) [TaxId: 9913]
d3qfmb_ : (LEU113) (HIS164) [view usage] : d.159.1.0 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 171101]
d3ck2a1 : (GLU66) (HIS110) [view usage] : d.159.1.7 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |YfcE-like |Uncharacterized protein SP1879 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1ynia1 : (SER307) (ASP352) [view usage] : d.126.1.7 |Pentein, beta/alpha-propeller |Pentein |Succinylarginine dihydrolase-like |Succinylarginine dihydrolase |Escherichia coli [TaxId: 562]
d3p8ka_ : (GLU131) (ALA170) [view usage] : d.160.1.0 |Carbon-nitrogen hydrolase |Carbon-nitrogen hydrolase |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
d1ii7a_ : (GLY127) (HIS173) [view usage] : d.159.1.4 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |DNA double-strand break repair nuclease |Mre11 |Pyrococcus furiosus [TaxId: 2261]
d1sija4 : (GLY628) (TRP683) [view usage] : d.133.1.1 |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Aldehyde oxidoreductase |Desulfovibrio gigas [TaxId: 879]
d2qq3i_ : (SER6) (GLY57) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 1462]
d1gnda2 : (ILE332) (GLU388) [view usage] : d.16.1.6 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |GDI-like |Guanine nucleotide dissociation inhibitor, GDI |Cow (Bos taurus) [TaxId: 9913]
d1f1za2 : (LEU116) (ASP165) [view usage] : c.52.1.16 |Restriction endonuclease-like |Restriction endonuclease-like |TnsA endonuclease, N-terminal domain |TnsA endonuclease, N-terminal domain |Escherichia coli [TaxId: 562]
d2bgwa2 : (ASP52) (GLY98) [view usage] : c.52.1.20 |Restriction endonuclease-like |Restriction endonuclease-like |XPF/Rad1/Mus81 nuclease |XPF endonuclease |Aeropyrum pernix [TaxId: 56636]
d2e11a_ : (GLU127) (ALA173) [view usage] : d.160.1.0 |Carbon-nitrogen hydrolase |Carbon-nitrogen hydrolase |automated matches |automated matches |Xanthomonas campestris pv. campestris [TaxId: 340]
d1vs5c1 : (ARG53) (ILE102) [view usage] : d.52.3.1 |Alpha-lytic protease prodomain-like |Prokaryotic type KH domain (KH-domain type II) |Prokaryotic type KH domain (KH-domain type II) |Ribosomal protein S3 N-terminal domain |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.159, d.157, c.14, c.47, c.107, d.160, d.126, d.133, c.52, d.16, d.52, d.80