Tableau information
Concept source: d2xzmf_ amino acid (a.a.) range (GLN16)(ASN74)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN16) (ARG27) E1
(LYS30) (GLU36) E2
(TYR44) (TRP54) H3
(CYS57) (ASP65) E4
(LYS68) (ASN74) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 163.4° E2
H3 -49.0° 147.5° H3
E4 117.9° -48.9° 150.1° E4
E5 -39.1° 156.2° -15.1° 153.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2xzmf_ : (GLN16) (ASN74) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d2jzpa_ : (MET1) (PHE62) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |automated matches |Peptostreptococcus magnus [TaxId: 1260]
d3eh8a2 : (GLU148) (THR204) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |automated matches |Emericella nidulans [TaxId: 162425]
d3b0ga3 : (GLY355) (ASN408) [view usage] : d.58.36.0 |Ferredoxin-like |Nitrite/Sulfite reductase N-terminal domain-like |automated matches |automated matches |Tobacco (Nicotiana tabacum) [TaxId: 4097]
d1vkwa_ : (ASP42) (GLY104) [view usage] : d.90.1.2 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |Putative nitroreductase TM1586 |Putative nitroreductase TM1586 |Thermotoga maritima [TaxId: 2336]
d1vkwa_ : (LYS153) (LEU204) [view usage] : d.90.1.2 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |Putative nitroreductase TM1586 |Putative nitroreductase TM1586 |Thermotoga maritima [TaxId: 2336]
d2dvia3 : (LYS336) (LYS381) [view usage] : d.58.16.2 |Ferredoxin-like |PAP/Archaeal CCA-adding enzyme, C-terminal domain |Archaeal tRNA CCA-adding enzyme |tRNA nucleotidyltransferase, C-terminal domain |Archaeoglobus fulgidus [TaxId: 2234]
d1dd5a_ : (ALA55) (PRO103) [view usage] : d.67.3.1 |RRF/tRNA synthetase additional domain-like |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Thermotoga maritima [TaxId: 2336]
d1k8wa5 : (TYR156) (ALA204) [view usage] : d.265.1.2 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase II TruB |Pseudouridine synthase II TruB |Escherichia coli [TaxId: 562]
d1wiha_ : (GLY26) (PRO75) [view usage] : d.67.3.1 |RRF/tRNA synthetase additional domain-like |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Mouse (Mus musculus), mitochondrial [TaxId: 10090]
d2akja1 : (GLY355) (ASN408) [view usage] : d.58.36.1 |Ferredoxin-like |Nitrite/Sulfite reductase N-terminal domain-like |Duplicated SiR/NiR-like domains 1 and 3 |Ferredoxin--nitrite reductase, NIR |Spinach (Spinacia oleracea) [TaxId: 3562]
d1dq3a4 : (GLU250) (GLU302) [view usage] : d.95.2.2 |Homing endonuclease-like |Homing endonucleases |Intein endonuclease |PI-Pfui intein |Pyrococcus furiosus [TaxId: 2261]
d2gjvb_ : (CYS47) (ALA132) [view usage] : d.323.1.2 |Phage tail protein-like |Phage tail protein-like |STM4215-like |Putative cytoplasmic protein STM4215 |Salmonella typhimurium [TaxId: 90371]
d1zj8a1 : (GLY333) (ASP385) [view usage] : d.58.36.1 |Ferredoxin-like |Nitrite/Sulfite reductase N-terminal domain-like |Duplicated SiR/NiR-like domains 1 and 3 |Sulfite reductase NirA |Mycobacterium tuberculosis [TaxId: 1773]
d2gjva1 : (CYS47) (ALA132) [view usage] : d.323.1.2 |Phage tail protein-like |Phage tail protein-like |STM4215-like |Putative cytoplasmic protein STM4215 |Salmonella typhimurium [TaxId: 90371]
d2if1a_ : (ILE44) (GLN99) [view usage] : d.64.1.1 |eIF1-like |eIF1-like |eIF1-like |Eukaryotic translation initiation factor eIF-1 (SUI1) |Human (Homo sapiens) [TaxId: 9606]
d2lkba_ : (ALA1) (ILE51) [view usage] : g.3.7.1 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Long-chain scorpion toxins |automated matches |Mesobuthus eupeus [TaxId: 34648]
d4inca_ : (GLN74) (GLY154) [view usage] : d.13.1.1 |HIT-like |HIT-like |HIT (HINT, histidine triad) family of protein kinase-interacting proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ptla_ : (VAL18) (PHE76) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin light chain-binding domain of protein L |Peptostreptococcus magnus [TaxId: 1260]
d1hnwd_ : (TYR138) (ARG187) [view usage] : d.66.1.2 |Alpha-L RNA-binding motif |Alpha-L RNA-binding motif |Ribosomal protein S4 (bacteria) |Ribosomal protein S4 |Thermus thermophilus [TaxId: 274]
d4njxd_ : (GLN74) (GLY154) [view usage] : d.13.1.1 |HIT-like |HIT-like |HIT (HINT, histidine triad) family of protein kinase-interacting proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1nd4a_ : (VAL36) (GLY95) [view usage] : d.144.1.6 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |APH phosphotransferases |Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) |Klebsiella pneumoniae [TaxId: 573]
d4inia_ : (GLN74) (GLY154) [view usage] : d.13.1.1 |HIT-like |HIT-like |HIT (HINT, histidine triad) family of protein kinase-interacting proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1p8kz2 : (GLU148) (SER205) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |DNA endonuclease I-AniI |Emericella nidulans (Aspergillus nidulans) [TaxId: 162425]
d1u56b_ : (GLY111) (LYS179) [view usage] : d.278.1.1 |Ligand-binding domain in the NO signalling and Golgi transport |Ligand-binding domain in the NO signalling and Golgi transport |H-NOX domain |Methyl-accepting chemotaxis protein |Thermoanaerobacter tengcongensis [TaxId: 119072]
d1zlta_ : (GLY21) (SER88) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Cell cycle checkpoint kinase chk1 |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.58, i.1, d.144, d.278, d.67, d.90, d.15, d.95, d.13, d.64, d.265, g.3, d.323, d.66