Tableau information
Concept source: d2nptb1 amino acid (a.a.) range (ARG45)(PRO92)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG45) (ARG51) E1
(GLU53) (ARG61) E2
(LYS64) (PHE76) H3
(ASP81) (ASN87) E4
(GLU88) (PRO92) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 150.2° E2
H3 -47.9° 146.6° H3
E4 108.9° -93.3° 103.0° E4
E5 -88.1° 66.8° -97.3° 159.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1iuea_ : (ALA1) (ASP60) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |2Fe-2S ferredoxin |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1fiqa2 : (ASP4) (SER69) [view usage] : d.15.4.2 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin domains from multidomain proteins |Xanthine oxidase, N-terminal domain |Cow (Bos taurus) [TaxId: 9913]
d3kjza_ : (GLU49) (LEU108) [view usage] : c.56.3.0 |Phosphorylase/hydrolase-like |Peptidyl-tRNA hydrolase-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1t0ya_ : (THR2) (GLY59) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Ubiquitin-like domain of tubulin folding cofactor B |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d2eena_ : (HIS59) (LEU124) [view usage] : d.63.1.0 |CYTH-like phosphatases |CYTH-like phosphatases |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d1x6fa1 : (SER24) (ALA75) [view usage] : g.37.1.1 |beta-beta-alpha zinc fingers |beta-beta-alpha zinc fingers |Classic zinc finger, C2H2 |Zinc finger protein 462, ZNF462 |Human (Homo sapiens) [TaxId: 9606]
d1s1ih_ : (PHE45) (ASP130) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3u5eh_ : (ASP42) (ASP107) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d4jhca_ : (ILE65) (HIS126) [view usage] : c.51.4.0 |Anticodon-binding domain-like |ITPase-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1u63a1 : (THR149) (VAL211) [view usage] : e.24.1.1 |Ribosomal protein L1 |Ribosomal protein L1 |Ribosomal protein L1 |Ribosomal protein L1 |Methanococcus jannaschii [TaxId: 2190]
d1fo4a2 : (ASP4) (SER69) [view usage] : d.15.4.2 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin domains from multidomain proteins |Xanthine oxidase, N-terminal domain |Cow (Bos taurus) [TaxId: 9913]
d2lgja_ : (ALA48) (LEU106) [view usage] : c.56.3.0 |Phosphorylase/hydrolase-like |Peptidyl-tRNA hydrolase-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1wcha_ : (ASN2264) (CYS2319) [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |Tyrosine-protein phosphatase, non-receptor type 13 (PTPL1) |Human (Homo sapiens) [TaxId: 9606]
d2v45a2 : (THR18) (SER80) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Periplasmic nitrate reductase alpha chain |Desulfovibrio desulfuricans [TaxId: 876]
d2c60a1 : (VAL45) (LEU93) [view usage] : d.15.2.2 |beta-Grasp (ubiquitin-like) |CAD & PB1 domains |PB1 domain |Mitogen-activated protein kinase kinase kinase 3, MEKK 3 |Human (Homo sapiens) [TaxId: 9606]
d2fn6a1 : (LEU173) (LYS223) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Spore coat polysaccharide biosynthesis protein C |Helicobacter pylori [TaxId: 210]
d1rw0a_ : (ALA3) (THR79) [view usage] : d.194.1.2 |CNF1/YfiH-like putative cysteine hydrolases |CNF1/YfiH-like putative cysteine hydrolases |YfiH-like |Hypothetical protein yfiH |Salmonella typhi [TaxId: 90370]
d2x9ry_ : (SER247) (HIS324) [view usage] : e.38.1.0 |Release factor |Release factor |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1k4ra_ : (THR197) (ASN237) [view usage] : i.17.1.1 |Virus envelope proteins |Virus envelope proteins |Virus envelope proteins |Virus envelope proteins |Dengue virus [TaxId: 12637]
d4lc3a_ : (LEU178) (ASP227) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d1u05a_ : (SER2) (THR79) [view usage] : d.194.1.2 |CNF1/YfiH-like putative cysteine hydrolases |CNF1/YfiH-like putative cysteine hydrolases |YfiH-like |Hypothetical protein yfiH |Shigella flexneri [TaxId: 623]
d2evra2 : (ASP183) (ARG234) [view usage] : d.3.1.16 |Cysteine proteinases |Cysteine proteinases |NlpC/P60 |Cell wall-associated hydrolase Spr C-terminal domain |Nostoc punctiforme [TaxId: 272131]
d1oeya_ : (ALA351) (PRO404) [view usage] : d.15.2.2 |beta-Grasp (ubiquitin-like) |CAD & PB1 domains |PB1 domain |Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) |Human (Homo sapiens) [TaxId: 9606]
d2fnia_ : (LEU173) (SER224) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Spore coat polysaccharide biosynthesis protein C |Helicobacter pylori [TaxId: 210]
d2gfqa1 : (ASN36) (VAL93) [view usage] : c.56.7.1 |Phosphorylase/hydrolase-like |AF0625-like |AF0625-like |Hypothetical protein PH0006 |Pyrococcus horikoshii [TaxId: 53953]
d3euba1 : (ASP4) (SER69) [view usage] : d.15.4.2 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin domains from multidomain proteins |automated matches |Cow (Bos taurus) [TaxId: 9913]
d1tdtc_ : (VAL45) (ASP84) [view usage] : b.81.1.2 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD |Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD |Mycobacterium bovis [TaxId: 1765]
d2jrha_ : (ARG5) (LEU52) [view usage] : d.15.2.2 |beta-Grasp (ubiquitin-like) |CAD & PB1 domains |PB1 domain |Mitogen-activated protein kinase kinase kinase 3, MEKK 3 |Human (Homo sapiens) [TaxId: 9606]
d3sr9a2 : (ASN1696) (GLU1756) [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2c81a_ : (ASP182) (GLY241) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Bacillus circulans [TaxId: 1397]
d2hg0a1 : (TYR202) (ARG234) [view usage] : f.10.1.0 |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |automated matches |automated matches |West Nile virus [TaxId: 11082]
d4gota_ : (HIS110) (LYS176) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d2hbwa2 : (GLY184) (GLN232) [view usage] : d.3.1.16 |Cysteine proteinases |Cysteine proteinases |NlpC/P60 |automated matches |Anabaena variabilis [TaxId: 240292]
d3dlka1 : (PRO55) (ASP110) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d1svba2 : (THR197) (ASN237) [view usage] : f.10.1.1 |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |Envelope glycoprotein |Tick-borne encephalitis virus [TaxId: 11084]
d2fnua_ : (LEU173) (SER224) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Spore coat polysaccharide biosynthesis protein C |Helicobacter pylori [TaxId: 210]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.67, b.81, c.81, c.94, i.1, c.56, c.45, d.194, d.3, c.51, d.15, d.63, e.24, e.38, i.17, g.37, f.10