Tableau information
Concept source: d2asqa_ amino acid (a.a.) range (TYR21)(GLN92)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TYR21) (GLN29) E1
(SER31) (LYS39) E2
(LEU44) (GLY56) H3
(SER61) (GLU67) E4
(ASP86) (GLN92) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 153.1° E2
H3 -48.9° 136.3° H3
E4 112.2° -84.9° 126.6° E4
E5 -41.0° 114.6° -56.3° 147.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1v9ka_ : (MSE96) (LYS156) [view usage] : d.265.1.3 |Pseudouridine synthase |Pseudouridine synthase |Pseudouridine synthase RsuA/RluD |Ribosomal large subunit pseudouridine synthase C, RluC |Escherichia coli [TaxId: 562]
d1i6fa_ : (TYR4) (GLU43) [view usage] : g.3.7.1 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Long-chain scorpion toxins |Scorpion toxin |Bark scorpion (Centruroides sculpturatus), cse-v5 [TaxId: 218467]
d4fdka_ : (GLY111) (LYS179) [view usage] : d.278.1.1 |Ligand-binding domain in the NO signalling and Golgi transport |Ligand-binding domain in the NO signalling and Golgi transport |H-NOX domain |Methyl-accepting chemotaxis protein |Thermoanaerobacter tengcongensis [TaxId: 119072]
d2lwpa_ : (ARG17) (GLY93) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Bag-family molecular chaperone regulator-1 |Mouse (Mus musculus) [TaxId: 10090]
d2mlma_ : (ALA15) (ASP66) [view usage] : b.100.1.1 |Sortase |Sortase |Sortase |Sortase A |Staphylococcus aureus [TaxId: 1280]
d2igha_ : (TYR8) (GLU61) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Streptococcus sp., group G [TaxId: 1306]
d1wfya_ : (ARG16) (THR87) [view usage] : d.15.1.5 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ras-binding domain, RBD |Regulator of G-protein signaling 14, RGS14 |Mouse (Mus musculus) [TaxId: 10090]
d1r13a1 : (ASN162) (ARG216) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |Surfactant protein, lectin domain |Norway rat (Rattus norvegicus), SP-A [TaxId: 10116]
d1dkta_ : (GLN5) (PRO72) [view usage] : d.97.1.1 |Cell cycle regulatory proteins |Cell cycle regulatory proteins |Cell cycle regulatory proteins |CksHs1 |Human (Homo sapiens) [TaxId: 9606]
d1qwza_ : (VAL72) (GLY133) [view usage] : b.100.1.1 |Sortase |Sortase |Sortase |Sortase B |Staphylococcus aureus [TaxId: 1280]
d3zxwb_ : (GLY35) (TYR104) [view usage] : d.73.1.1 |RuBisCO, small subunit |RuBisCO, small subunit |RuBisCO, small subunit |automated matches |Thermosynechococcus elongatus [TaxId: 197221]
d2ghfa3 : (SER101) (ILE148) [view usage] : g.37.1.1 |beta-beta-alpha zinc fingers |beta-beta-alpha zinc fingers |Classic zinc finger, C2H2 |Zinc fingers and homeoboxes protein 1, ZHX1 |Human (Homo sapiens) [TaxId: 9606]
d1jyha_ : (GLY83) (ALA151) [view usage] : d.60.1.3 |Probable bacterial effector-binding domain |Probable bacterial effector-binding domain |Gyrase inhibitory protein GyrI (SbmC, YeeB) |Gyrase inhibitory protein GyrI (SbmC, YeeB) |Escherichia coli [TaxId: 562]
d2v2gb_ : (LYS170) (PRO217) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Arenicola marina [TaxId: 6344]
d1xccd_ : (PRO171) (ASN219) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |1-Cys peroxiredoxin |Plasmodium yoelii yoelii [TaxId: 73239]
d1sn4a_ : (TYR5) (ILE49) [view usage] : g.3.7.1 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Long-chain scorpion toxins |Scorpion toxin |Chinese scorpion (Buthus martensii), toxin m4 [TaxId: 34649]
d1s20f_ : (GLN66) (ARG119) [view usage] : c.122.1.1 |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |2,3-diketogulonate oxidoreductase (YiaK) |Escherichia coli [TaxId: 562]
d1ryja_ : (ILE6) (ARG68) [view usage] : d.15.3.2 |beta-Grasp (ubiquitin-like) |MoaD/ThiS |ThiS |Hypothetical protein MTH1743 |Methanobacterium thermoautotrophicum [TaxId: 145262]
d3dhhc_ : (SER2) (PHE82) [view usage] : d.15.12.0 |beta-Grasp (ubiquitin-like) |TmoB-like |automated matches |automated matches |Pseudomonas mendocina [TaxId: 300]
d2kbha_ : (TYR5) (TYR49) [view usage] : g.3.7.1 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Long-chain scorpion toxins |automated matches |Mesobuthus martensii [TaxId: 34649]
d3dhgf_ : (SER2) (PHE82) [view usage] : d.15.12.0 |beta-Grasp (ubiquitin-like) |TmoB-like |automated matches |automated matches |Pseudomonas mendocina [TaxId: 300]
d1wy8a1 : (MET8) (ARG81) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Ubiquitin-like PHD and RING finger domain-containing protein 2 |Human (Homo sapiens) [TaxId: 9606]
d2v41c_ : (LYS170) (PRO217) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Arenicola marina [TaxId: 6344]
d1zywa_ : (TYR7) (ILE51) [view usage] : g.3.7.1 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Long-chain scorpion toxins |Scorpion toxin |Chinese scorpion (Buthus martensii), toxin m1 [TaxId: 34649]
d2i61a_ : (TYR3) (GLY46) [view usage] : g.3.7.1 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Long-chain scorpion toxins |automated matches |Leiurus quinquestriatus [TaxId: 6884]
d4bwsc_ : (ASP280) (ASN331) [view usage] : d.76.1.1 |GYF/BRK domain-like |GYF domain |GYF domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3n1xc_ : (ALA2) (PHE83) [view usage] : d.15.12.1 |beta-Grasp (ubiquitin-like) |TmoB-like |TmoB-like |Toluene, o-xylene monooxygenase oxygenase subunit TouB |Pseudomonas sp. [TaxId: 320855]
d1nxub_ : (GLN66) (ARG119) [view usage] : c.122.1.1 |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |2,3-diketogulonate oxidoreductase (YiaK) |Escherichia coli [TaxId: 562]
d2xzmp_ : (THR2) (ASP75) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1xcca_ : (PRO171) (ASN219) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |1-Cys peroxiredoxin |Plasmodium yoelii yoelii [TaxId: 73239]
d1otrb_ : (MET1) (LEU73) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Ubiquitin |Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]
d2asqa_ : (TYR21) (GLN92) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |SUMO-1 (smt3 homologue) |Human (Homo sapiens) [TaxId: 9606]
d1zxha_ : (LEU4) (ALA56) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Streptococcus sp., group G [TaxId: 1306]
d2lxaa_ : (HIS75) (ASP128) [view usage] : d.15.1.0 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d2hj8a_ : (ASP86) (ARG160) [view usage] : d.15.1.0 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1i42a_ : (THR296) (THR370) [view usage] : d.15.1.2 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |UBX domain |p47 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2v2gd_ : (LYS170) (PRO217) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Arenicola marina [TaxId: 6344]
d1qxaa_ : (VAL72) (GLY133) [view usage] : b.100.1.1 |Sortase |Sortase |Sortase |Sortase B |Staphylococcus aureus [TaxId: 1280]
d2igga_ : (TYR8) (GLU61) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Streptococcus sp., group G [TaxId: 1306]
d1xccb_ : (PRO171) (ASN219) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |1-Cys peroxiredoxin |Plasmodium yoelii yoelii [TaxId: 73239]
d1lqqa_ : (TYR5) (TYR49) [view usage] : g.3.7.1 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Long-chain scorpion toxins |alpha toxin |Leiurus quinquestriatus quinquestriatus, LQQIII [TaxId: 6885]
d1ng5a_ : (VAL43) (VAL103) [view usage] : b.100.1.1 |Sortase |Sortase |Sortase |Sortase B |Staphylococcus aureus [TaxId: 1280]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
i.1, c.47, d.169, d.278, c.122, d.15, d.73, d.265, b.100, g.3, g.37, d.97, d.60, d.76