Tableau information
Concept source: d1qkza_ amino acid (a.a.) range (THR6)(LYS62)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR6) (ILE12) E1
(GLY19) (LYS24) E2
(ASP27) (GLY43) H3
(GLU47) (ALA53) E4
(THR56) (LYS62) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 159.9° E2
H3 -32.7° 139.7° H3
E4 139.5° -59.9° 142.7° E4
E5 -17.3° 142.6° -34.4° 155.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1fccc_ : (THR1) (GLU56) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Streptococcus sp., group G [TaxId: 1306]
d2bqqa_ : (VAL55) (SER129) [view usage] : d.15.11.1 |beta-Grasp (ubiquitin-like) |Doublecortin (DC) |Doublecortin (DC) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1mhxa_ : (HIS7) (GLU65) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Streptococcus sp., group G [TaxId: 1306]
d1qkza_ : (THR6) (LYS62) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Streptococcus sp., group G [TaxId: 1306]
d1k50a_ : (VAL4) (PHE62) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin light chain-binding domain of protein L |Peptostreptococcus magnus [TaxId: 1260]
d1gb1a_ : (MET1) (GLU56) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Streptococcus sp., group G [TaxId: 1306]
d1k52a_ : (VAL4) (PHE62) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin light chain-binding domain of protein L |Peptostreptococcus magnus [TaxId: 1260]
d1ymhe_ : (VAL821) (PHE879) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |automated matches |Finegoldia magna [TaxId: 334413]
d1k53a_ : (GLU3) (PHE62) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin light chain-binding domain of protein L |Peptostreptococcus magnus [TaxId: 1260]
d2bh2b2 : (ARG129) (HIS207) [view usage] : c.66.1.40 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |(Uracil-5-)-methyltransferase |rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain |Escherichia coli [TaxId: 562]
d1hz6b_ : (GLU2) (PHE62) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin light chain-binding domain of protein L |Peptostreptococcus magnus [TaxId: 1260]
d1y8ta1 : (GLY263) (LYS313) [view usage] : b.36.1.4 |PDZ domain-like |PDZ domain-like |HtrA-like serine proteases |Protease PepD |Mycobacterium tuberculosis [TaxId: 1773]
d1hz6a_ : (GLU3) (PHE62) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin light chain-binding domain of protein L |Peptostreptococcus magnus [TaxId: 1260]
d3filb_ : (MET1) (GLU56) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Streptococcus sp., group G [TaxId: 1306]
d1igca_ : (THR6) (GLU61) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Streptococcus sp., group G [TaxId: 1306]
d1mi0a_ : (ALA4) (GLU61) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Streptococcus sp., group G [TaxId: 1306]
d1mhhf_ : (GLU1820) (GLY1881) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin light chain-binding domain of protein L |Peptostreptococcus magnus [TaxId: 1260]
d1fd6a_ : (THR3) (GLU57) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Streptococcus sp., group G [TaxId: 1306]
d1igda_ : (PRO3) (GLU61) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Streptococcus sp., group G [TaxId: 1306]
d2jwza_ : (MET1) (LEU71) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Ubiquitin |Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]
d1p7ea_ : (MET1) (GLU56) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Streptococcus sp., group G [TaxId: 1306]
d1gb4a_ : (THR2) (GLU57) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Streptococcus sp., group G [TaxId: 1306]
d2rpva_ : (SER17) (GLU75) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |automated matches |Streptococcus sp. [TaxId: 1320]
d1w6tb1 : (PRO143) (ARG211) [view usage] : c.1.11.1 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |Enolase |Enolase |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1fcla_ : (PHE3) (GLU56) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Streptococcus sp., group G [TaxId: 1306]
d1hz5a_ : (VAL4) (PHE62) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin light chain-binding domain of protein L |Peptostreptococcus magnus [TaxId: 1260]
d2zw1a_ : (ASP1) (GLU56) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |automated matches |Finegoldia magna [TaxId: 1260]
d1pgxa_ : (PRO11) (GLU69) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Streptococcus sp., group G [TaxId: 1306]
d3mp9a_ : (ASP9) (GLU64) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Streptococcus sp., group G [TaxId: 1306]
d1c9fa_ : (LYS9) (LEU74) [view usage] : d.15.2.1 |beta-Grasp (ubiquitin-like) |CAD & PB1 domains |CAD domain |Caspase-activated DNase (CAD), DFF40, N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d1uwva2 : (ARG129) (HIS207) [view usage] : c.66.1.40 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |(Uracil-5-)-methyltransferase |rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain |Escherichia coli [TaxId: 562]
d1uwxb_ : (THR6) (LYS62) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |automated matches |Streptococcus sp. [TaxId: 1306]
d2lhda_ : (THR2) (GLU56) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |automated matches |Artificial gene [TaxId: 32630]
d2yvcc3 : (ASN6) (ALA82) [view usage] : d.15.1.4 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |First domain of FERM |Radixin |Mouse (Mus musculus) [TaxId: 10090]
d2bh2a2 : (ALA131) (ARG206) [view usage] : c.66.1.40 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |(Uracil-5-)-methyltransferase |rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain |Escherichia coli [TaxId: 562]
d2zw0a_ : (ASP1) (GLU56) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |automated matches |Finegoldia magna [TaxId: 1260]
d1rfaa_ : (ASN56) (VAL128) [view usage] : d.15.1.5 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ras-binding domain, RBD |c-Raf1 RBD |Human (Homo sapiens) [TaxId: 9606]
d2gi9a_ : (MET1) (GLU56) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Staphylococcus aureus [TaxId: 1280]
d3iamc1 : (ARG3) (THR95) [view usage] : d.15.4.0 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2j52a_ : (THR2) (GLU56) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |automated matches |Streptococcus sp. [TaxId: 1306]
d2on8a_ : (MET1) (GLU56) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Streptococcus sp., group G [TaxId: 1306]
d1em7a_ : (THR1) (GLU56) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Streptococcus sp., group G [TaxId: 1306]
d2lhea_ : (TYR3) (GLU56) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |automated matches |Artificial gene [TaxId: 32630]
d2kaca_ : (VAL4) (PHE62) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |automated matches |Peptostreptococcus magnus [TaxId: 1260]
d1mhhe_ : (GLU820) (ALA880) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin light chain-binding domain of protein L |Peptostreptococcus magnus [TaxId: 1260]
d1mi0b_ : (ASP7) (GLU62) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Streptococcus sp., group G [TaxId: 1306]
d2onqa_ : (MET1) (GLU56) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Streptococcus sp., group G [TaxId: 1306]
d3zlfb2 : (LYS140) (LYS211) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Streptococcus pyogenes [TaxId: 286636]
d3fila_ : (GLN2) (GLU56) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Streptococcus sp., group G [TaxId: 1306]
d2rmma_ : (MET1) (GLU56) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Streptococcus sp. [TaxId: 1320]
d1heze_ : (GLU820) (PHE879) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin light chain-binding domain of protein L |Peptostreptococcus magnus [TaxId: 1260]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.66, d.15, b.36