Tableau information
Concept source: d1qa9a_ amino acid (a.a.) range (THR59)(ARG105)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR59) (LYS64) E1
(GLY66) (HIS72) E2
(LYS74) (ILE80) H3
(ILE80) (TYR86) E4
(LEU94) (ARG105) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 152.9° E2
H3 -43.9° -150.4° H3
E4 -37.5° 151.5° 57.8° E4
E5 138.2° -15.6° -144.3° 153.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ya5b2 : (PHE150) (GLU196) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2qr0b1 : (ARG66) (VAL111) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |T-cell antigen receptor |Human (Homo sapiens), gamma-chain [TaxId: 9606]
d1nakh1 : (ARG66) (SER112) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 7.2 [TaxId: 10090]
d1nunb1 : (ILE204) (GLU250) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Fibroblast growth factor receptor, FGFR |Human (Homo sapiens), FGFR2b [TaxId: 9606]
d3ea1a_ : (THR183) (GLY239) [view usage] : c.1.18.2 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Bacterial PLC |automated matches |Bacillus thuringiensis [TaxId: 1428]
d1wwbx_ : (THR340) (MET379) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Ligand binding domain of trkB receptor |Human (Homo sapiens) [TaxId: 9606]
d1smob_ : (ARG84) (LYS135) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |TREM-1 (triggering receptor expressed on myeloid cells 1) |Human (Homo sapiens) [TaxId: 9606]
d1qksa2 : (LEU443) (PRO491) [view usage] : b.70.2.1 |8-bladed beta-propeller |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |Paracoccus denitrificans [TaxId: 266]
d4lveb_ : (ARG361) (ILE406) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Human (Homo sapiens), cluster 2 [TaxId: 9606]
d2wbjg1 : (ARG60) (PRO112) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3grwa1 : (ILE201) (GLU247) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2l21a_ : (GLU1912) (GLY1955) [view usage] : b.64.1.1 |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Cation-independent mannose-6-phosphate receptor (MIR-receptor) |Chicken (Gallus gallus) [TaxId: 9031]
d2dava1 : (HIS59) (GLU111) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Myosin-binding protein C, slow-type |Human (Homo sapiens) [TaxId: 9606]
d4maea_ : (TRP240) (THR293) [view usage] : b.70.1.0 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |automated matches |automated matches |Methylacidiphilum fumariolicum [TaxId: 1156937]
d1fltx_ : (ARG183) (ARG224) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Second domain of the Flt-1 receptor |Human (Homo sapiens) [TaxId: 9606]
d4pbvd2 : (ARG182) (VAL224) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1wita_ : (LEU49) (GLN93) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Twitchin |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1uuzb_ : (GLY38) (PRO88) [view usage] : d.233.1.1 |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Pseudomonas aeruginosa [TaxId: 287]
d1dr9a1 : (ARG56) (LYS105) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |CD80, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1ci5a1 : (ARG52) (GLU94) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |CD2-binding domain of CD58, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3cafa_ : (GLY206) (VAL249) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Fibroblast growth factor receptor, FGFR |Human (Homo sapiens), FGFR2a [TaxId: 9606]
d4m1gl1 : (ARG62) (ILE107) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1pg7w1 : (PHE62) (VAL106) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain lambda variable domain, VL-lambda |Mouse (Mus musculus) [TaxId: 10090]
d1djsa1 : (GLY206) (GLU250) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Fibroblast growth factor receptor, FGFR |Human (Homo sapiens), FGFR2a [TaxId: 9606]
d2cqva1 : (HIS53) (ASP99) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Telokin |Human (Homo sapiens) [TaxId: 9606]
d2dkua_ : (GLN55) (GLY95) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1epfa1 : (ILE50) (GLN97) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Neural cell adhesion molecule (NCAM) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3ojvc1 : (TYR206) (GLU249) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3kaab_ : (ARG63) (ALA113) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4ps6a_ : (GLY62) (PRO112) [view usage] : d.233.1.1 |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |Inhibitor of vertebrate lysozyme, Ivy |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1cvsc1 : (GLY205) (GLU249) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Fibroblast growth factor receptor, FGFR |Human (Homo sapiens), FGFR1 [TaxId: 9606]
d1qnzh_ : (LYS179) (SER231) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, c.1, b.1, b.64, d.233