Tableau information
Concept source: d3t8xc2 amino acid (a.a.) range (GLY229)(ARG278)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY229) (ALA239) E1
(TRP241) (ASP250) E2
(ALA252) (GLY258) H3
(SER260) (HIS265) E4
(ASP272) (ARG278) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 159.0° E2
H3 -69.1° 125.2° H3
E4 -43.8° 154.9° 57.4° E4
E5 118.9° -40.3° -134.2° 159.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1zt1a1 : (GLU232) (TRP274) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Class I MHC, alpha-3 domain |Mouse (Mus musculus) [TaxId: 10090]
d1o75a1 : (ASP211) (HIS280) [view usage] : b.1.20.1 |Immunoglobulin-like beta-sandwich |Tp47 lipoprotein, middle and C-terminal domains |Tp47 lipoprotein, middle and C-terminal domains |Tp47 lipoprotein, middle and C-terminal domains |Treponema pallidum [TaxId: 160]
d1rmfh2 : (PRO173) (ILE216) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus) [TaxId: 10090]
d1jeqa3 : (SER257) (GLU330) [view usage] : b.131.1.1 |SPOC domain-like |SPOC domain-like |Ku70 subunit middle domain |Ku70 subunit middle domain |Human (Homo sapiens) [TaxId: 9606]
d3b9kc2 : (GLY158) (ARG211) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Rat (Rattus rattus) [TaxId: 10117]
d4fxwa_ : (SER414) (TYR463) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Splicing factor U2AF 65 KDa subunit |Human (Homo sapiens) [TaxId: 9606]
d1xzpa3 : (ASP2) (LYS66) [view usage] : d.250.1.2 |Folate-binding domain |Folate-binding domain |TrmE formyl-THF-binding domain |TrmE formyl-THF-binding domain |Thermotoga maritima [TaxId: 2336]
d1x0gc_ : (LEU55) (PRO95) [view usage] : b.124.1.0 |HesB-like domain |HesB-like domain |automated matches |automated matches |Thermosynechococcus elongatus [TaxId: 197221]
d1yuhb2 : (GLY167) (PRO217) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus) [TaxId: 10090]
d1mcww2 : (GLY162) (GLU214) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin light chain lambda constant domain, CL-lambda |Human (Homo sapiens) [TaxId: 9606]
d1y60d_ : (VAL3007) (LEU3053) [view usage] : d.14.1.12 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Formaldehyde-activating enzyme, FAE |Formaldehyde-activating enzyme, FAE |Methylobacterium extorquens [TaxId: 408]
d1q10a_ : (LYS4) (GLU56) [view usage] : d.15.7.1 |beta-Grasp (ubiquitin-like) |Immunoglobulin-binding domains |Immunoglobulin-binding domains |Immunoglobulin-binding protein G, different constituent domains |Streptococcus sp., group G [TaxId: 1306]
d1zt4c1 : (THR230) (GLY278) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1b3ja1 : (GLN229) (PRO271) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Class I MHC homolog, alpha-3 domain |Human (Homo sapiens), Mic-a [TaxId: 9606]
d2je8a3 : (LYS721) (ARG777) [view usage] : b.1.4.1 |Immunoglobulin-like beta-sandwich |beta-Galactosidase/glucuronidase domain |beta-Galactosidase/glucuronidase domain |Beta-mannosidase, domains 2, 4 and 5 |Bacteroides thetaiotaomicron [TaxId: 818]
d1fj1b2 : (SER162) (SER213) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus) [TaxId: 10090]
d1ghfh2 : (PRO169) (LYS211) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus) [TaxId: 10090]
d1dkma_ : (GLY290) (GLN355) [view usage] : c.60.1.2 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Histidine acid phosphatase |Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) |Escherichia coli [TaxId: 562]
d2ihr1_ : (VAL149) (PRO207) [view usage] : e.38.1.0 |Release factor |Release factor |automated matches |automated matches |Thermus thermophilus [TaxId: 274]
d4imla2 : (ASN180) (ARG233) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1e1ta2 : (ARG253) (GLY320) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Lysyl-tRNA synthetase (LysRS) |Escherichia coli, gene lysU [TaxId: 562]
d1dgir_ : (VAL95) (GLN152) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Poliovirus complexed with three domain CD155 |Human poliovirus type 1 [TaxId: 12080]
d1dgir_ : (PRO187) (TYR241) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Poliovirus complexed with three domain CD155 |Human poliovirus type 1 [TaxId: 12080]
d1dgir_ : (PRO288) (VAL329) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Poliovirus complexed with three domain CD155 |Human poliovirus type 1 [TaxId: 12080]
d2q5we_ : (GLY84) (HIS137) [view usage] : d.41.5.0 |alpha/beta-Hammerhead |Molybdopterin synthase subunit MoaE |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d1j5qa1 : (ASN54) (TYR109) [view usage] : b.121.2.3 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Group II dsDNA viruses VP |Major capsid protein vp54 |Major capsid protein vp54 |Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]
d2cq1a1 : (THR86) (TYR130) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Polypyrimidine tract-binding protein 2, PTBP2 |Human (Homo sapiens) [TaxId: 9606]
d2rcja2 : (GLY167) (PRO218) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Human (Homo sapiens) [TaxId: 9606]
d1r94a_ : (GLU51) (ASN92) [view usage] : b.124.1.1 |HesB-like domain |HesB-like domain |HesB-like domain |Fe-S scaffold protein IscA (YfhF) |Escherichia coli [TaxId: 562]
d3sxla1 : (ASN152) (SER199) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Sex-lethal protein |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1mkfa_ : (VAL145) (PRO187) [view usage] : b.116.1.1 |Viral chemokine binding protein m3 |Viral chemokine binding protein m3 |Viral chemokine binding protein m3 |Viral chemokine binding protein m3 |Murid herpesvirus 4, MuHV-4 [TaxId: 33708]
d1ufwa_ : (VAL52) (GLY91) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Synaptojanin 2 |Human (Homo sapiens) [TaxId: 9606]
d2mgza_ : (VAL129) (ASN172) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1wi6a1 : (LYS93) (LEU135) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Ribonucleoprotein PTB-binding 1, Raver-1 |Mouse (Mus musculus) [TaxId: 10090]
d3cmba1 : (HIS137) (GLU206) [view usage] : d.347.1.1 |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase-like |Acetoacetate decarboxylase |Methanoculleus marisnigri [TaxId: 2198]
d1xzqa3 : (ASP2) (LYS66) [view usage] : d.250.1.2 |Folate-binding domain |Folate-binding domain |TrmE formyl-THF-binding domain |TrmE formyl-THF-binding domain |Thermotoga maritima [TaxId: 2336]
d1y60a_ : (VAL7) (LEU53) [view usage] : d.14.1.12 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Formaldehyde-activating enzyme, FAE |Formaldehyde-activating enzyme, FAE |Methylobacterium extorquens [TaxId: 408]
d3q6fa2 : (LYS163) (THR209) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2j12b_ : (VAL91) (LEU138) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1m4xa_ : (ASN54) (TYR109) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |PBCV-1 virus capsid, quasi-atomic model |Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]
d3s7rb_ : (ASP97) (LYS143) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.58, i.6, d.104, d.14, b.121, c.60, b.1, d.347, d.250, d.41, d.15, e.38, b.131, b.124, b.116