Tableau information
Concept source: d2rmpa_ amino acid (a.a.) range (GLN232)(PRO271)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN232) (THR238) E1
(PHE242) (PRO246) E2
(ALA249) (ALA257) H3
(ASP260) (GLN265) E4
(GLY267) (PRO271) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 161.3° E2
H3 -78.8° 115.4° H3
E4 73.8° -88.5° 146.5° E4
E5 -75.2° 118.8° 3.6° 143.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3rf1b_ : (TYR52) (LEU131) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |automated matches |Campylobacter jejuni [TaxId: 354242]
d4qkud2 : (GLU315) (SER363) [view usage] : d.177.1.0 |FAH |FAH |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d4a3ra2 : (THR141) (ASN211) [view usage] : c.1.11.1 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |Enolase |automated matches |Bacillus subtilis [TaxId: 1423]
d1mppa_ : (GLN210) (PRO248) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Pepsin |Mucor pusillus [TaxId: 4840]
d1miqb_ : (ASN210) (THR248) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Plasmepsin (a hemoglobin-degrading enzyme) |Plasmodium vivax [TaxId: 5855]
d2rmpa_ : (GLN232) (PRO271) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Rhizomucor miehei [TaxId: 4839]
d2ffka_ : (LYS101) (ASP186) [view usage] : b.27.1.1 |Soluble secreted chemokine inhibitor, VCCI |Soluble secreted chemokine inhibitor, VCCI |Soluble secreted chemokine inhibitor, VCCI |automated matches |Rabbitpox virus [TaxId: 32606]
d1b70a_ : (ARG195) (PRO272) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS |Thermus thermophilus [TaxId: 274]
d2fqmd_ : (PRO111) (LYS170) [view usage] : d.378.1.1 |Phosphoprotein oligomerization domain-like |Phosphoprotein oligomerization domain-like |Phosphoprotein oligomerization domain-like |Phosphoprotein P (M1) |Vesicular stomatitis indiana virus [TaxId: 11277]
d3h0na_ : (THR98) (ASP158) [view usage] : d.380.1.1 |Jann2411-like |Jann2411-like |Jann2411-like |Uncharacterized protein Jann2411 |Jannaschia sp. CCS1 [TaxId: 290400]
d4nn0c_ : (VAL197) (TYR233) [view usage] : b.22.1.0 |TNF-like |TNF-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1izda_ : (ASP207) (PRO249) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Fungus (Aspergillus oryzae) [TaxId: 5062]
d2h6sa_ : (ASP214) (ASP255) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |automated matches |Yeast (Candida albicans) [TaxId: 5476]
d4lt6b1 : (VAL92) (GLU159) [view usage] : d.218.1.0 |Nucleotidyltransferase |Nucleotidyltransferase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2eb6a_ : (ILE188) (GLY238) [view usage] : d.177.1.0 |FAH |FAH |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1n91a_ : (VAL31) (ASN87) [view usage] : d.206.1.1 |YggU-like |YggU-like |YggU-like |Hypothetical protein YggU |Escherichia coli, o157 [TaxId: 562]
d3j39u_ : (ASN231) (PHE286) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d1zapa_ : (ASP214) (ASP255) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Yeast (Candida albicans) [TaxId: 5476]
d2qzxa_ : (THR213) (ASP255) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |automated matches |Yeast (Candida albicans) [TaxId: 5476]
d3vlaa_ : (GLY267) (ASP316) [view usage] : b.50.1.0 |Acid proteases |Acid proteases |automated matches |automated matches |Carrot (Daucus carota) [TaxId: 4039]
d1eq6a_ : (GLU65) (GLN129) [view usage] : d.107.1.1 |Mog1p/PsbP-like |Mog1p/PsbP-like |Ran-binding protein mog1p |Ran-binding protein mog1p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4a19m_ : (ILE56) (TYR109) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d5pepa_ : (CYS210) (SER249) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Pepsin(ogen) |Pig (Sus scrofa) [TaxId: 9823]
d1tu1a_ : (GLN18) (GLN92) [view usage] : d.107.1.3 |Mog1p/PsbP-like |Mog1p/PsbP-like |PA0094-like |Hypothetical protein PA0094 |Pseudomonas aeruginosa [TaxId: 287]
d3nela2 : (GLU174) (PHE236) [view usage] : d.104.1.0 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |automated matches |automated matches |Thermococcus kodakarensis [TaxId: 311400]
d1jg5a_ : (GLY32) (GLU83) [view usage] : d.205.1.1 |GTP cyclohydrolase I feedback regulatory protein, GFRP |GTP cyclohydrolase I feedback regulatory protein, GFRP |GTP cyclohydrolase I feedback regulatory protein, GFRP |GTP cyclohydrolase I feedback regulatory protein, GFRP |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ibqa_ : (SER206) (SER249) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Fungus (Aspergillus phoenicis), aspergillopepsin [TaxId: 5063]
d3pepa_ : (GLY208) (SER250) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Pepsin(ogen) |Pig (Sus scrofa) [TaxId: 9823]
d1eiya2 : (ARG195) (TRP271) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS |Thermus thermophilus [TaxId: 274]
d1miqa_ : (ASN210) (THR248) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Plasmepsin (a hemoglobin-degrading enzyme) |Plasmodium vivax [TaxId: 5855]
d3fv3a_ : (ASP215) (TYR254) [view usage] : b.50.1.0 |Acid proteases |Acid proteases |automated matches |automated matches |Candida parapsilosis [TaxId: 5480]
d3pcoa_ : (PRO184) (LYS262) [view usage] : d.104.1.0 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1is7k_ : (GLY33) (GLU84) [view usage] : d.205.1.1 |GTP cyclohydrolase I feedback regulatory protein, GFRP |GTP cyclohydrolase I feedback regulatory protein, GFRP |GTP cyclohydrolase I feedback regulatory protein, GFRP |GTP cyclohydrolase I feedback regulatory protein, GFRP |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1fa0b4 : (GLY81) (LYS147) [view usage] : d.218.1.3 |Nucleotidyltransferase |Nucleotidyltransferase |Poly(A) polymerase, PAP, N-terminal domain |Poly(A) polymerase, PAP, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1apte_ : (PHE208) (ASP248) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]
d2fqmc_ : (PRO111) (THR174) [view usage] : d.378.1.1 |Phosphoprotein oligomerization domain-like |Phosphoprotein oligomerization domain-like |Phosphoprotein oligomerization domain-like |Phosphoprotein P (M1) |Vesicular stomatitis indiana virus [TaxId: 11277]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, i.1, b.50, d.104, d.177, b.22, d.218, b.27, d.378, d.380, d.206, d.107, d.205