Tableau information
Concept source: d1oqqa_ amino acid (a.a.) range (SER1)(ASN53)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER1) (SER7) E1
(THR11) (ASP16) E2
(SER22) (GLY31) H3
(ASP34) (CYS39) E4
(THR47) (ASN53) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 162.9° E2
H3 -67.4° 111.6° H3
E4 112.0° -53.4° -124.4° E4
E5 106.1° -90.6° 107.6° -123.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.3° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1r7sa_ : (SER1) (ASN53) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |2Fe-2S ferredoxin |Pseudomonas putida, putidaredoxin [TaxId: 303]
d4ltua_ : (PRO1) (ASP53) [view usage] : d.15.4.0 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
d1oqqa_ : (SER1) (ASN53) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |2Fe-2S ferredoxin |Pseudomonas putida, putidaredoxin [TaxId: 303]
d1e7pb2 : (ARG3) (MET68) [view usage] : d.15.4.2 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin domains from multidomain proteins |Fumarate reductase iron-sulfur protein, N-terminal domain |Wolinella succinogenes [TaxId: 844]
d1e9ma_ : (ALA1) (ASP53) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |2Fe-2S ferredoxin |Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]
d3ab5a_ : (LYS3) (VAL53) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |automated matches |Cyanidioschyzon merolae [TaxId: 45157]
d4jwuc_ : (SER1) (ASN53) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |2Fe-2S ferredoxin |Pseudomonas putida, putidaredoxin [TaxId: 303]
d1nekb2 : (MET1) (ASN66) [view usage] : d.15.4.2 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin domains from multidomain proteins |Succinate dehydogenase iron-sulfur protein, N-terminal domain |Escherichia coli [TaxId: 562]
d1oqra_ : (SER1) (ASN53) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |2Fe-2S ferredoxin |Pseudomonas putida, putidaredoxin [TaxId: 303]
d3w5ub_ : (TYR3) (VAL52) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |2Fe-2S ferredoxin |Maize (Zea mays) [TaxId: 4577]
d1gaqb_ : (TYR3) (VAL51) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |2Fe-2S ferredoxin |Maize (Zea mays) [TaxId: 4577]
d3w5ud_ : (TYR3) (VAL52) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |2Fe-2S ferredoxin |Maize (Zea mays) [TaxId: 4577]
d2y5ca_ : (ASP4) (GLU58) [view usage] : d.15.4.0 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1c4aa2 : (MET1) (GLU54) [view usage] : d.15.4.2 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin domains from multidomain proteins |Fe-only hydrogenase, N-terminal domain |Clostridium pasteurianum [TaxId: 1501]
d3w5uf_ : (TYR3) (VAL52) [view usage] : d.15.4.1 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |2Fe-2S ferredoxin-related |2Fe-2S ferredoxin |Maize (Zea mays) [TaxId: 4577]
d3huia_ : (ALA1) (ASP53) [view usage] : d.15.4.0 |beta-Grasp (ubiquitin-like) |2Fe-2S ferredoxin-like |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 1076]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.15