Tableau information
Concept source: d4jvwa_ amino acid (a.a.) range (TYR500)(LYS554)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TYR500) (GLY510) E1
(GLY513) (THR524) E2
(THR524) (SER530) H3
(GLU532) (HIS540) E4
(LEU546) (LYS554) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 149.5° E2
H3 -77.9° 99.1° H3
E4 -52.6° 157.2° -91.4° E4
E5 110.5° -39.2° -97.4° 158.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1pqza1 : (ASP197) (TRP240) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunomodulatory protein m144, alpha-3 domain |Murine cytomegalovirus [TaxId: 10366]
d1wvza_ : (GLY61) (ASP102) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1igyb3 : (THR306) (LYS358) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma |Mouse (Mus musculus) [TaxId: 10090]
d1vsca1 : (ASP94) (LEU141) [view usage] : b.1.1.3 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C2 set domains |Vascular cell adhesion molecule-1 (VCAM-1) |Human (Homo sapiens) [TaxId: 9606]
d1pdka1 : (GLN57) (PRO117) [view usage] : b.1.11.1 |Immunoglobulin-like beta-sandwich |PapD-like |Pilus chaperone |Pilus chaperone PapD, N-domain |Escherichia coli [TaxId: 562]
d1mcoh4 : (PRO380) (LEU428) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma |Human (Homo sapiens) [TaxId: 9606]
d1c3ga2 : (ASN260) (GLN301) [view usage] : b.4.1.1 |HSP40/DnaJ peptide-binding domain |HSP40/DnaJ peptide-binding domain |HSP40/DnaJ peptide-binding domain |Heat shock protein 40 Sis1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4j4pa1 : (THR281) (LYS327) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4hx1a2 : (GLU232) (TRP274) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Class I MHC, alpha-3 domain |Human (Homo sapiens) [TaxId: 9606]
d3s7gb2 : (PRO395) (SER442) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1igtb4 : (GLU423) (PHE472) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma |Mouse (Mus musculus), gamma2 [TaxId: 10090]
d2w59a1 : (MET400) (ARG448) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1vcaa1 : (ASP94) (LEU141) [view usage] : b.1.1.3 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C2 set domains |Vascular cell adhesion molecule-1 (VCAM-1) |Human (Homo sapiens) [TaxId: 9606]
d1o0va1 : (ALA282) (LYS327) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon |Human (Homo sapiens) [TaxId: 9606]
d1h3ta2 : (PRO395) (SER442) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma |Human (Homo sapiens) [TaxId: 9606]
d1u58a1 : (ASP198) (TRP241) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunomodulatory protein m144, alpha-3 domain |Murine cytomegalovirus [TaxId: 10366]
d1oqoa2 : (ASN390) (SER442) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma |Human (Homo sapiens) [TaxId: 9606]
d4llaa2 : (ASP145) (SER201) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2e51a_ : (LYS53) (VAL121) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Winged bean (Psophocarpus tetragonolobus), basic agglutinin [TaxId: 3891]
d1o0vb3 : (GLN494) (VAL543) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon |Human (Homo sapiens) [TaxId: 9606]
d1dr9a1 : (ILE2) (SER44) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |CD80, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1gnza_ : (ASP56) (ALA104) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Griffonia simplicifolia, lectin I-b4 [TaxId: 3850]
d2z3ff1 : (ASP54) (MET118) [view usage] : b.1.22.1 |Immunoglobulin-like beta-sandwich |ASF1-like |ASF1-like |Anti-silencing protein 1, ASF1 |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d1mimh2 : (PRO169) (PRO215) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Human (Homo sapiens) [TaxId: 9606]
d1a3lh2 : (PRO175) (LYS222) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus) [TaxId: 10090]
d1c5db2 : (SER165) (ARG214) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1a6za1 : (PRO231) (TRP275) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Hemochromatosis protein Hfe, alpha-3 domain |Human (Homo sapiens) [TaxId: 9606]
d1frtc1 : (THR289) (LYS338) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2j6eb2 : (PRO395) (SER442) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1mcoh2 : (GLY166) (LEU219) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Human (Homo sapiens) [TaxId: 9606]
d2q2ga2 : (ARG87) (GLU128) [view usage] : b.4.1.0 |HSP40/DnaJ peptide-binding domain |HSP40/DnaJ peptide-binding domain |automated matches |automated matches |Cryptosporidium parvum [TaxId: 353152]
d1mcph2 : (PRO176) (CYS222) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha |Mouse (Mus musculus) [TaxId: 10090]
d2cx0a2 : (HIS0) (ILE59) [view usage] : d.17.6.4 |Cystatin-like |Pre-PUA domain |Hypothetical protein APE0525, N-terminal domain |Hypothetical protein APE0525, N-terminal domain |Aeropyrum pernix [TaxId: 56636]
d1e4ka2 : (ASN390) (SER442) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.29, b.1, d.17, b.4