Protein Concepts Dictionary

Tableau information

Concept source:  d2os3a_  amino acid (a.a.) range (GLY140)(ASN189)

nSSEs in this Concept: 5

String of secondary struct.elems. (SSEs) defining this concept: EEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLY140)  (HIS145) E1
	  (VAL148)  (TYR152) E2
	  (GLN158)  (GLY166) E3
	  (GLY166)  (GLY181) H4
	  (LEU183)  (ASN189) H5

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                 
E2       72.5°   E2                          
E3     -127.9°  157.8°   E3                   
H4       96.5°   57.6° -120.3°   H4            
H5       88.7°  157.6°  -44.3°  114.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1lmha_ :   (GLY120)  (ASP169)   [view usage] : d.167.1.1 |Peptide deformylase |Peptide deformylase |Peptide deformylase |Peptide deformylase |Staphylococcus aureus [TaxId: 1280]
 d1lqwa_ :   (GLY120)  (ASP169)   [view usage] : d.167.1.1 |Peptide deformylase |Peptide deformylase |Peptide deformylase |Peptide deformylase |Staphylococcus aureus [TaxId: 1280]
 d2defa_ :    (GLU95)  (SER147)   [view usage] : d.167.1.1 |Peptide deformylase |Peptide deformylase |Peptide deformylase |Peptide deformylase |Escherichia coli [TaxId: 562]
 d2oklb_ :   (GLY119)  (ASN168)   [view usage] : d.167.1.1 |Peptide deformylase |Peptide deformylase |Peptide deformylase |automated matches |Bacillus cereus [TaxId: 226900]
 d1ah2a_ :   (ASP191)  (THR247)   [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Serine protease PB92 (subtilisin PB92) |Bacillus alcalophilus [TaxId: 1445]
 d2os3a_ :   (GLY140)  (ASN189)   [view usage] : d.167.1.1 |Peptide deformylase |Peptide deformylase |Peptide deformylase |Peptide deformylase |Streptococcus pyogenes [TaxId: 160490]
 d3uwaa_ :    (ASP97)  (PHE148)   [view usage] : d.167.1.0 |Peptide deformylase |Peptide deformylase |automated matches |automated matches |Synechococcus phage [TaxId: 445686]
 d1af4a_ :   (GLU197)  (ALA254)   [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Subtilisin |Bacillus licheniformis [TaxId: 1402]
 d1thma_ :   (ASP201)  (ALA256)   [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Thermitase |Thermoactinomyces vulgaris [TaxId: 2026]
 d3f7ma_ :   (ASP304)  (MET352)   [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |automated matches |Lecanicillium psalliotae [TaxId: 73499]
 d1sh7b_ :   (LEU197)  (ALA253)   [view usage] : c.41.1.0 |Subtilisin-like |Subtilisin-like |automated matches |automated matches |Vibrio sp. [TaxId: 210249]
 d2gkoa_ :   (ILE226)  (ASP286)   [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |automated matches |Bacillus subtilis [TaxId: 1423]
 d3uwba_ :    (ASP97)  (ASN149)   [view usage] : d.167.1.0 |Peptide deformylase |Peptide deformylase |automated matches |automated matches |Synechococcus phage [TaxId: 445686]
 d2ixta_ :   (ILE227)  (ASP287)   [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |automated matches |Bacillus sphaericus [TaxId: 1421]
 d1lqya_ :   (GLY119)  (ASN168)   [view usage] : d.167.1.1 |Peptide deformylase |Peptide deformylase |Peptide deformylase |Peptide deformylase |Bacillus stearothermophilus [TaxId: 1422]
 d3f7oa_ :   (ASP203)  (SER260)   [view usage] : c.41.1.0 |Subtilisin-like |Subtilisin-like |automated matches |automated matches |Paecilomyces lilacinus [TaxId: 33203]
 d2okla_ :   (GLY119)  (ILE167)   [view usage] : d.167.1.1 |Peptide deformylase |Peptide deformylase |Peptide deformylase |automated matches |Bacillus cereus [TaxId: 226900]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.41,   d.167