Protein Concepts Dictionary

Tableau information

Concept source:  d2i7pa1  amino acid (a.a.) range (LEU185)(GLY241)

nSSEs in this Concept: 5

String of secondary struct.elems. (SSEs) defining this concept: EEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (LEU185)  (GLY191) E1
	  (GLY193)  (ALA198) E2
	  (ASP203)  (LEU213) E3
	  (GLY214)  (LEU225) H4
	  (PHE231)  (GLY241) H5

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                 
E2      170.8°   E2                          
E3      -42.9°  146.2°   E3                   
H4      -31.7° -156.9°  -18.3°   H4            
H5      108.2°  -80.6°   68.4°   76.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.9°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1q97b_ :   (LEU164)  (ILE225)   [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Sky1p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d3smpb2 :   (MET410)  (GLY466)   [view usage] : c.55.1.14 |Ribonuclease H-like motif |Actin-like ATPase domain |Fumble-like |Pantothenate kinase 1, PANK1 |Human (Homo sapiens) [TaxId: 9606]
 d4nb4d_ :    (TYR92)  (GLY147)   [view usage] : c.55.1.14 |Ribonuclease H-like motif |Actin-like ATPase domain |Fumble-like |Type II pantothenate kinase, CoaW |Staphylococcus aureus [TaxId: 1280]
 d2pw0a1 :    (LYS73)  (PRO130)   [view usage] : d.21.1.0 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |automated matches |automated matches |Shewanella oneidensis [TaxId: 70863]
 d1rpaa_ :   (HIS282)  (MET341)   [view usage] : c.60.1.2 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Histidine acid phosphatase |Prostatic acid phosphatase |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2i7pa1 :   (LEU185)  (GLY241)   [view usage] : c.55.1.14 |Ribonuclease H-like motif |Actin-like ATPase domain |Fumble-like |Pantothenate kinase 3, PANK3 |Human (Homo sapiens) [TaxId: 9606]
 d2i7na2 :   (MET410)  (GLY466)   [view usage] : c.55.1.14 |Ribonuclease H-like motif |Actin-like ATPase domain |Fumble-like |Pantothenate kinase 1, PANK1 |Human (Homo sapiens) [TaxId: 9606]
 d2i7pc1 :   (LEU185)  (GLY241)   [view usage] : c.55.1.14 |Ribonuclease H-like motif |Actin-like ATPase domain |Fumble-like |Pantothenate kinase 3, PANK3 |Human (Homo sapiens) [TaxId: 9606]
 d3mk6c2 :   (LEU185)  (GLY241)   [view usage] : c.55.1.14 |Ribonuclease H-like motif |Actin-like ATPase domain |Fumble-like |Pantothenate kinase 3, PANK3 |Human (Homo sapiens) [TaxId: 9606]
 d4nb4h_ :    (TYR92)  (GLY147)   [view usage] : c.55.1.14 |Ribonuclease H-like motif |Actin-like ATPase domain |Fumble-like |Type II pantothenate kinase, CoaW |Staphylococcus aureus [TaxId: 1280]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.144,    c.55,    c.60,    d.21