Tableau information
Concept source: d3f1sa_ amino acid (a.a.) range (PHE254)(MET307)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PHE254) (LYS260) E1
(ARG263) (GLN272) E2
(ASN274) (MET282) E3
(ASP287) (LEU295) H4
(THR296) (MET307) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 159.5° E2
E3 -35.4° 159.9° E3
H4 90.2° -74.8° 124.6° H4
H5 122.1° -76.0° 101.0° 104.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4dtea_ : (ASN201) (SER247) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Plasminogen activator inhibitor-1 |Zebrafish (Danio rerio) [TaxId: 7955]
d1eqnc_ : (VAL204) (GLN244) [view usage] : e.13.1.1 |DNA primase core |DNA primase core |DNA primase DnaG catalytic core |DNA primase DnaG catalytic core |Escherichia coli [TaxId: 562]
d1qynb_ : (GLU39) (LEU106) [view usage] : d.33.1.1 |SecB-like |SecB-like |Bacterial protein-export protein SecB |Bacterial protein-export protein SecB |Escherichia coli [TaxId: 562]
d1f8ra2 : (GLY343) (HIS401) [view usage] : d.16.1.5 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |L-aminoacid/polyamine oxidase |L-aminoacid oxidase |Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
d1mhca2 : (GLY111) (ASN174) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Class I MHC, alpha-1 and alpha-2 domains |Mouse (Mus musculus), H-2M3 [TaxId: 10090]
d4k7gb_ : (ALA145) (ILE222) [view usage] : d.21.1.0 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |automated matches |automated matches |Agrobacterium vitis [TaxId: 311402]
d2peea_ : (ASN252) (ALA304) [view usage] : e.1.1.0 |Serpins |Serpins |automated matches |automated matches |Thermoanaerobacter tengcongensis [TaxId: 273068]
d4dy7f_ : (PHE207) (ILE264) [view usage] : e.1.1.0 |Serpins |Serpins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2bisb_ : (GLY52) (LEU115) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |automated matches |Pyrococcus abyssi [TaxId: 29292]
d4aqha_ : (ASN209) (ASN265) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2id1a1 : (GLY63) (GLY105) [view usage] : d.218.1.12 |Nucleotidyltransferase |Nucleotidyltransferase |Iojap/YbeB-like |Hypothetical protein CV0518 |Chromobacterium violaceum [TaxId: 536]
d4dy7c_ : (PHE207) (ILE264) [view usage] : e.1.1.0 |Serpins |Serpins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gzpa2 : (GLY108) (LYS178) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |CD1, alpha-1 and alpha-2 domains |Human (Homo sapiens), CD1b [TaxId: 9606]
d1ymma2 : (GLN18) (ASN78) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Class II MHC alpha chain, N-terminal domain |Mouse (Mus musculus), I-AU [TaxId: 10090]
d4aqhb_ : (ASN209) (ASN265) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1eqnd_ : (VAL204) (GLN244) [view usage] : e.13.1.1 |DNA primase core |DNA primase core |DNA primase DnaG catalytic core |DNA primase DnaG catalytic core |Escherichia coli [TaxId: 562]
d2bmoa1 : (GLY96) (GLY132) [view usage] : b.33.1.2 |ISP domain |ISP domain |Ring hydroxylating alpha subunit ISP domain |Nitrobenzene dioxygenase alpha subunit, NBDO-alpha |Comamonas sp. JS765 [TaxId: 58226]
d3froa_ : (GLY52) (ARG116) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |automated matches |Pyrococcus abyssi [TaxId: 29292]
d3r4la_ : (PHE231) (ASN288) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1c5ga_ : (ASN232) (MET289) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Plasminogen activator inhibitor-1 |Human (Homo sapiens) [TaxId: 9606]
d4fqxc1 : (GLY32) (LEU90) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4kdsa_ : (PHE202) (GLU259) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Plasminogen activator inhibitor-1 |Rainbow trout (Oncorhynchus mykiss) [TaxId: 8022]
d2g5xa_ : (ASN57) (PHE103) [view usage] : d.165.1.0 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |automated matches |automated matches |Lychnis chalcedonica [TaxId: 39855]
d3b39b_ : (VAL204) (GLN244) [view usage] : e.13.1.1 |DNA primase core |DNA primase core |DNA primase DnaG catalytic core |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2bisa1 : (GLY52) (LEU115) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |Glycogen synthase 1, GlgA |Pyrococcus abyssi [TaxId: 29292]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.165, c.87, e.13, d.21, d.19, e.1, d.16, d.218, d.33, b.33