Tableau information
Concept source: d1c1fa_ amino acid (a.a.) range (ARG29)(ASN78)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG29) (GLY35) E1
(SER42) (HIS47) E2
(THR57) (LYS65) E3
(LYS65) (TRP70) H4
(THR72) (ASN78) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 164.3° E2
E3 -39.4° 153.3° E3
H4 115.7° -65.7° 127.1° H4
E5 130.1° -34.3° 158.2° -73.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3j38c_ : (MET93) (TYR152) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d4c7pa2 : (ASN240) (PRO298) [view usage] : d.129.9.1 |TBP-like |RalF, C-terminal domain |RalF, C-terminal domain |automated matches |Legionella pneumophila [TaxId: 272624]
d1mu7a1 : (ASN247) (PRO300) [view usage] : d.136.1.3 |Phospholipase D/nuclease |Phospholipase D/nuclease |Tyrosyl-DNA phosphodiesterase TDP1 |Tyrosyl-DNA phosphodiesterase TDP1 |Human (Homo sapiens) [TaxId: 9606]
d3nida_ : (PHE171) (SER222) [view usage] : b.69.8.1 |7-bladed beta-propeller |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Human (Homo sapiens), isoform IIb [TaxId: 9606]
d3fcua_ : (PHE171) (SER222) [view usage] : b.69.8.1 |7-bladed beta-propeller |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Human (Homo sapiens), isoform IIb [TaxId: 9606]
d4oryb_ : (TYR105) (ARG151) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1rw9a3 : (GLY375) (THR428) [view usage] : b.30.5.2 |Supersandwich |Galactose mutarotase-like |Hyaluronate lyase-like, central domain |Chondroitinase AC |Arthrobacter aurescens [TaxId: 43663]
d3fcuc_ : (PHE171) (SER222) [view usage] : b.69.8.1 |7-bladed beta-propeller |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |Human (Homo sapiens), isoform IIb [TaxId: 9606]
d1gixh_ : (ARG14) (PRO70) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |70S ribosome functional complex |Thermus thermophilus [TaxId: 274]
d1c1fa_ : (ARG29) (ASN78) [view usage] : b.29.1.3 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Galectin (animal S-lectin) |Congerin I |Conger eel (Conger myriaster) [TaxId: 7943]
d1mu7b1 : (ALA253) (PRO300) [view usage] : d.136.1.3 |Phospholipase D/nuclease |Phospholipase D/nuclease |Tyrosyl-DNA phosphodiesterase TDP1 |Tyrosyl-DNA phosphodiesterase TDP1 |Human (Homo sapiens) [TaxId: 9606]
d1f1sa4 : (SER622) (ASN678) [view usage] : b.30.5.2 |Supersandwich |Galactose mutarotase-like |Hyaluronate lyase-like, central domain |Hyaluronate lyase |Streptococcus agalactiae [TaxId: 1311]
d2wnrb1 : (PRO28) (TYR79) [view usage] : d.14.1.0 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |automated matches |automated matches |Methanothermobacter thermautotrophicus [TaxId: 145262]
d1cn4b2 : (VAL125) (GLU173) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Erythropoietin (EPO) receptor |Human (Homo sapiens) [TaxId: 9606]
d1pp0b_ : (PHE1118) (LYS1193) [view usage] : d.103.1.1 |CytB endotoxin-like |CytB endotoxin-like |CytB endotoxin-like |Volvatoxin A2 |Volvariella volvacea, different isoforms [TaxId: 36659]
d2pywa_ : (VAL38) (MET116) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1mu9b1 : (ASN247) (PRO300) [view usage] : d.136.1.3 |Phospholipase D/nuclease |Phospholipase D/nuclease |Tyrosyl-DNA phosphodiesterase TDP1 |Tyrosyl-DNA phosphodiesterase TDP1 |Human (Homo sapiens) [TaxId: 9606]
d3o2ya_ : (GLY103) (ARG151) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1j0ma3 : (LEU389) (ASN442) [view usage] : b.30.5.2 |Supersandwich |Galactose mutarotase-like |Hyaluronate lyase-like, central domain |Xanthan lyase |Bacillus sp. GL1 [TaxId: 84635]
d1fkae_ : (ASP5) (PRO70) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Prokaryotic (30S subunit) |Thermus thermophilus [TaxId: 274]
d1dv4e_ : (GLU30) (VAL97) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Prokaryotic (30S subunit) |Thermus thermophilus [TaxId: 274]
d2pora_ : (GLU1) (SER64) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Rhodobacter capsulatus [TaxId: 1061]
d2y8wa2 : (PHE153) (PRO211) [view usage] : d.58.53.1 |Ferredoxin-like |CRISPR-associated protein |CRISPR-associated protein |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1cqib2 : (ASN94) (ASP150) [view usage] : d.142.1.4 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Escherichia coli [TaxId: 562]
d1smoa_ : (HIS78) (ILE115) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |TREM-1 (triggering receptor expressed on myeloid cells 1) |Human (Homo sapiens) [TaxId: 9606]
d1jy1a1 : (ALA253) (PRO300) [view usage] : d.136.1.3 |Phospholipase D/nuclease |Phospholipase D/nuclease |Tyrosyl-DNA phosphodiesterase TDP1 |Tyrosyl-DNA phosphodiesterase TDP1 |Human (Homo sapiens) [TaxId: 9606]
d1i94e2 : (ARG14) (LEU71) [view usage] : d.50.1.2 |dsRBD-like |dsRNA-binding domain-like |Ribosomal S5 protein, N-terminal domain |Ribosomal S5 protein, N-terminal domain |Thermus thermophilus [TaxId: 274]
d2dika3 : (GLY234) (PRO290) [view usage] : d.142.1.5 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Pyruvate phosphate dikinase, N-terminal domain |Pyruvate phosphate dikinase, N-terminal domain |Clostridium symbiosum [TaxId: 1512]
d2p9pf_ : (GLN49) (ASN120) [view usage] : d.198.2.1 |Secretion chaperone-like |Arp2/3 complex subunits |Arp2/3 complex subunits |ARPC4 (20 kDa subunit) |Cow (Bos taurus) [TaxId: 9913]
d1jllb2 : (ASN94) (ALA148) [view usage] : d.142.1.4 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Escherichia coli [TaxId: 562]
d2fp4b2 : (ASN101) (ASP157) [view usage] : d.142.1.4 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d4oclc_ : (ASN58) (GLY100) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.58, b.69, i.1, b.29, b.30, d.129, f.4, d.144, b.60, d.14, b.1, d.142, d.136, d.50, d.198, d.103