Tableau information
Concept source: d1jkha1 amino acid (a.a.) range (ALA437)(ASP498)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA437) (ASN447) E1
(LEU452) (ASN460) E2
(ARG463) (ASP471) E3
(THR473) (SER489) H4
(GLU492) (ASP498) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 162.1° E2
E3 -25.0° 168.0° E3
H4 154.5° -35.8° 146.6° H4
E5 -31.9° 131.9° -49.7° 160.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1sk3a_ : (HIS243) (GLY315) [view usage] : d.118.1.1 |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |Peptidoglycan recognition protein I-alpha |Human (Homo sapiens) [TaxId: 9606]
d2itga_ : (GLY59) (ASP116) [view usage] : c.55.3.2 |Ribonuclease H-like motif |Ribonuclease H-like |Retroviral integrase, catalytic domain |Retroviral integrase, catalytic domain |Human immunodeficiency virus type 1 [TaxId: 11676]
d1hxva_ : (ASP34) (ALA86) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |Trigger factor PPIase domain |Mycoplasma genitalium [TaxId: 2097]
d3un1a_ : (ARG30) (ASN79) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]
d4odda_ : (GLY84) (GLY149) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Canis lupus [TaxId: 9615]
d3kksa_ : (LEU60) (ASP116) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Bovine immunodeficiency virus [TaxId: 417296]
d3irta_ : (ASN159) (LEU219) [view usage] : d.3.1.6 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase UCH-L |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1j4ba_ : (ASP58) (GLY99) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Mouse (Mus musculus) [TaxId: 10090]
d1rdua_ : (ALA2) (ALA68) [view usage] : c.55.5.1 |Ribonuclease H-like motif |Nitrogenase accessory factor-like |MTH1175-like |Hypothetical protein TM1290 |Thermotoga maritima [TaxId: 2336]
d1cbka_ : (ALA4) (ILE98) [view usage] : d.58.30.1 |Ferredoxin-like |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |Haemophilus influenzae [TaxId: 727]
d1xd3c_ : (HIS169) (ALA226) [view usage] : d.3.1.6 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase UCH-L |Ubiquitin carboxyl-terminal hydrolase UCH-l3 |Human (Homo sapiens) [TaxId: 9606]
d2lena_ : (PHE160) (CYS220) [view usage] : d.3.1.6 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase UCH-L |Ubiquitin carboxyl-terminal hydrolase isozyme l1 |Human (Homo sapiens) [TaxId: 9606]
d4e89a_ : (THR520) (ASP583) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Xenotropic mulv-related virus [TaxId: 373193]
d2d9fa_ : (GLN38) (ASP91) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3lm9a1 : (ALA0) (SER57) [view usage] : c.55.1.10 |Ribonuclease H-like motif |Actin-like ATPase domain |ROK |Putative fructokinase YhdR |Bacillus subtilis [TaxId: 1423]
d4k44b_ : (ALA690) (ASN757) [view usage] : d.93.1.1 |SH2-like |SH2 domain |SH2 domain |Phospholipase C-gamma-1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1z84b2 : (ILE228) (SER297) [view usage] : d.13.1.2 |HIT-like |HIT-like |Hexose-1-phosphate uridylyltransferase |Galactose-1-phosphate uridylyltransferase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1wn9a1 : (GLU28) (VAL93) [view usage] : d.319.1.1 |TTHA1528-like |TTHA1528-like |TTHA1528-like |Hypothetical protein TTHA1528 (TT1805) |Thermus thermophilus [TaxId: 274]
d3v1oa_ : (THR520) (ASP583) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Xenotropic mulv-related virus vp35 [TaxId: 356663]
d3lbba_ : (HIS7) (LEU69) [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Streptococcus mutans [TaxId: 210007]
d2r56a_ : (GLU89) (PHE151) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |beta-Lactoglobulin |Cow (Bos taurus) [TaxId: 9913]
d3rvba2 : (GLU346) (ARG393) [view usage] : c.37.1.14 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RNA helicase |HCV helicase domain |Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
d1e4gt1 : (LYS6) (SER84) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Cell division protein FtsA |Thermotoga maritima [TaxId: 2336]
d1bcma2 : (GLN264) (ILE335) [view usage] : c.55.3.3 |Ribonuclease H-like motif |Ribonuclease H-like |mu transposase, core domain |mu transposase, core domain |Bacteriophage Mu [TaxId: 10677]
d3fiqa_ : (LEU91) (LEU149) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ewqa3 : (GLU130) (ALA181) [view usage] : c.55.6.1 |Ribonuclease H-like motif |DNA repair protein MutS, domain II |DNA repair protein MutS, domain II |DNA repair protein MutS, domain II |Thermus aquaticus [TaxId: 271]
d1i04a_ : (PRO111) (SER170) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Major urinary protein/alpha-2u-globulin |Mouse (Mus musculus) [TaxId: 10090]
d1xd3a_ : (HIS169) (ALA226) [view usage] : d.3.1.6 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase UCH-L |Ubiquitin carboxyl-terminal hydrolase UCH-l3 |Human (Homo sapiens) [TaxId: 9606]
d3logd_ : (GLN61) (TRP109) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Salicylate synthase MbtI |Mycobacterium tuberculosis [TaxId: 1773]
d1iweb_ : (ASP58) (GLY99) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Mouse (Mus musculus) [TaxId: 10090]
d1z84a2 : (ILE228) (SER297) [view usage] : d.13.1.2 |HIT-like |HIT-like |Hexose-1-phosphate uridylyltransferase |Galactose-1-phosphate uridylyltransferase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2ch6a2 : (ILE4) (LEU75) [view usage] : c.55.1.5 |Ribonuclease H-like motif |Actin-like ATPase domain |BadF/BadG/BcrA/BcrD-like |N-acetylglucosamine kinase, NAGK |Human (Homo sapiens) [TaxId: 9606]
d2q39b_ : (LEU295) (PHE351) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |beta-Lactoglobulin |Cow (Bos taurus) [TaxId: 9913]
d1e3ma3 : (ARG128) (ALA181) [view usage] : c.55.6.1 |Ribonuclease H-like motif |DNA repair protein MutS, domain II |DNA repair protein MutS, domain II |DNA repair protein MutS, domain II |Escherichia coli [TaxId: 562]
d1bcmb2 : (GLN264) (ILE335) [view usage] : c.55.3.3 |Ribonuclease H-like motif |Ribonuclease H-like |mu transposase, core domain |mu transposase, core domain |Bacteriophage Mu [TaxId: 10677]
d3ifwa_ : (HIS161) (ALA218) [view usage] : d.3.1.6 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase UCH-L |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1lfwa2 : (GLY317) (GLY378) [view usage] : d.58.19.1 |Ferredoxin-like |Bacterial exopeptidase dimerisation domain |Bacterial exopeptidase dimerisation domain |Aminopeptidase PepV |Lactobacillus delbrueckii [TaxId: 1584]
d1wv8a1 : (ARG2) (PRO69) [view usage] : d.304.1.1 |TTHA1013/TTHA0281-like |TTHA1013/TTHA0281-like |TTHA1013-like |Hypothetical protein TTHA1013 |Thermus thermophilus [TaxId: 274]
d2fwra2 : (ALA25) (ILE83) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |DNA repair protein RAD25 |Archaeoglobus fulgidus [TaxId: 2234]
d3l3ua_ : (GLY59) (ASP116) [view usage] : c.55.3.2 |Ribonuclease H-like motif |Ribonuclease H-like |Retroviral integrase, catalytic domain |Retroviral integrase, catalytic domain |Human immunodeficiency virus type 1 [TaxId: 11676]
d1dj3a_ : (ASP45) (VAL86) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Wheat (Triticum aestivum) [TaxId: 4565]
d2etla1 : (ASN159) (LEU219) [view usage] : d.3.1.6 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase UCH-L |Ubiquitin carboxyl-terminal hydrolase isozyme l1 |Human (Homo sapiens) [TaxId: 9606]
d1xc3a1 : (MET1) (SER57) [view usage] : c.55.1.10 |Ribonuclease H-like motif |Actin-like ATPase domain |ROK |Putative fructokinase YhdR |Bacillus subtilis [TaxId: 1423]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.2, d.58, c.37, c.55, b.60, d.3, d.38, d.118, d.13, d.93, d.26, d.161, d.319, d.304