Tableau information
Concept source: d4h8qa_ amino acid (a.a.) range (GLY8)(GLU62)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY8) (LYS18) E1
(ALA35) (ASP41) E2
(LYS43) (ASN52) E3
(ASN52) (THR57) H4
(THR57) (GLU62) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 127.5° E2
E3 -56.5° 158.2° E3
H4 63.1° -65.7° 108.4° H4
E5 103.4° -44.4° 155.4° 67.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2itea1 : (ILE69) (ASN120) [view usage] : b.1.28.1 |Immunoglobulin-like beta-sandwich |NEAT domain-like |NEAT domain |Iron-regulated surface determinant protein A, IsdA |Staphylococcus aureus [TaxId: 1280]
d2ex6a_ : (PHE174) (ASP225) [view usage] : e.3.1.3 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |Dac-like |DD-carboxypeptidase DacB |Escherichia coli [TaxId: 562]
d1nbqa2 : (SER133) (ASN191) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Junction adhesion molecule, JAM, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d4h8pa_ : (ILE12) (GLU62) [view usage] : b.1.28.0 |Immunoglobulin-like beta-sandwich |NEAT domain-like |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d3cu7a4 : (ASP405) (ALA456) [view usage] : b.1.29.5 |Immunoglobulin-like beta-sandwich |Macroglobulin |Complement C3 MG4-like |Complement C5 MG4 |Human (Homo sapiens) [TaxId: 9606]
d1x5ka1 : (THR19) (GLY76) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Neogenin |Human (Homo sapiens) [TaxId: 9606]
d2pcfb_ : (ASN99) (GLY155) [view usage] : i.4.1.1 |Electron transport chains |Electron transport chains |Electron transport chains |Cytochrome f-plastocyanin complex |Plant (Spinacia oleracea) and (Brassica rapa) [TaxId: 3562]
d3quga_ : (ALA550) (GLU600) [view usage] : b.1.28.0 |Immunoglobulin-like beta-sandwich |NEAT domain-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 158878]
d1shya_ : (CYS519) (ASN566) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Hepatocyte growth factor, HGF |Human (Homo sapiens) [TaxId: 9606]
d2y3nc_ : (THR62) (THR110) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |automated matches |Bacteroides cellulosolvens [TaxId: 35825]
d1ut2b_ : (SER91) (GLY134) [view usage] : b.2.3.6 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Dr-family adhesin |DraA/Afimbrial adhesin Afa-III |Escherichia coli [TaxId: 562]
d3rura_ : (ASP344) (VAL397) [view usage] : b.1.28.0 |Immunoglobulin-like beta-sandwich |NEAT domain-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 158879]
d1hzva2 : (GLY373) (GLN419) [view usage] : b.70.2.1 |8-bladed beta-propeller |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |Pseudomonas aeruginosa [TaxId: 287]
d4h8qa_ : (GLY8) (GLU62) [view usage] : b.1.28.0 |Immunoglobulin-like beta-sandwich |NEAT domain-like |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d3eyja_ : (ARG150) (SER207) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |automated matches |Influenza A virus [TaxId: 11320]
d2avfa1 : (PRO71) (PRO116) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Achromobacter cycloclastes [TaxId: 223]
d3h1he2 : (SER72) (LEU135) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1ba9a_ : (GLY85) (VAL148) [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Human (Homo sapiens) [TaxId: 9606]
d4k2um2 : (ASP143) (ALA196) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1vu24_ : (GLU5039) (GLU5069) [view usage] : b.38.1.0 |Sm-like fold |Sm-like ribonucleoproteins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3qzmb_ : (ILE69) (ASN120) [view usage] : b.1.28.1 |Immunoglobulin-like beta-sandwich |NEAT domain-like |NEAT domain |automated matches |Staphylococcus aureus [TaxId: 158879]
d3rtlb_ : (ASP344) (VAL397) [view usage] : b.1.28.0 |Immunoglobulin-like beta-sandwich |NEAT domain-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 158879]
d3sikb_ : (GLY36) (GLU90) [view usage] : b.1.28.0 |Immunoglobulin-like beta-sandwich |NEAT domain-like |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, e.3, b.19, b.47, b.2, b.6, b.1, b.38, b.33, i.4