Tableau information
Concept source: d1gqtb_ amino acid (a.a.) range (GLY5)(GLY65)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY5) (GLY11) E1
(ALA15) (LEU21) E2
(ASN34) (VAL38) E3
(LYS43) (GLY55) H4
(ASN57) (GLY65) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 70.5° E2
E3 -114.1° 175.1° E3
H4 -157.0° -97.5° 78.8° H4
E5 -16.8° 86.1° -98.6° -153.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2c49b_ : (GLU6) (SER63) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Methanococcus jannaschii [TaxId: 2190]
d3ahyc_ : (ASP291) (LYS373) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Trichoderma reesei [TaxId: 51453]
d1ng0a_ : (TRP63) (PRO110) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Sobemovirus coat protein |Cocksfoot mottle virus [TaxId: 40979]
d1cgta4 : (THR72) (ASN139) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus circulans, different strains [TaxId: 1397]
d2c4ea_ : (GLU6) (SER63) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Methanococcus jannaschii [TaxId: 2190]
d3bzwb_ : (LYS180) (ASP234) [view usage] : c.23.10.9 |Flavodoxin-like |SGNH hydrolase |BT2961-like |Uncharacterized protein BT2961 |Bacteroides thetaiotaomicron [TaxId: 818]
d1kwga2 : (GLY306) (ARG351) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |A4 beta-galactosidase |Thermus thermophilus [TaxId: 274]
d3bzwa1 : (LYS180) (ASP234) [view usage] : c.23.10.9 |Flavodoxin-like |SGNH hydrolase |BT2961-like |Uncharacterized protein BT2961 |Bacteroides thetaiotaomicron [TaxId: 818]
d2dboa_ : (GLU72) (ILE124) [view usage] : c.110.1.0 |DTD-like |DTD-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 224324]
d1asya2 : (LYS266) (GLY321) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Aspartyl-tRNA synthetase (AspRS) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2jlsa1 : (GLY420) (GLY476) [view usage] : c.37.1.14 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RNA helicase |automated matches |Dengue virus 4 [TaxId: 408688]
d1ifga_ : (TYR69) (TYR118) [view usage] : b.16.1.1 |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Ecotin, trypsin inhibitor |Escherichia coli [TaxId: 562]
d1gqtc_ : (GLY5) (GLY65) [view usage] : c.72.1.1 |Ribokinase-like |Ribokinase-like |Ribokinase-like |Ribokinase |Escherichia coli [TaxId: 562]
d2c49a_ : (GLU6) (SER63) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Methanococcus jannaschii [TaxId: 2190]
d3ewma_ : (SER2) (GLY57) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d1w91a2 : (ASP223) (GLU278) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Beta-D-xylosidase, catalytic domain |Bacillus stearothermophilus [TaxId: 1422]
d3kd6b_ : (SER2) (GLY51) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Chlorobaculum tepidum [TaxId: 1097]
d3kd6a_ : (SER2) (GLY48) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Chlorobaculum tepidum [TaxId: 1097]
d1i24a_ : (CYS138) (GLN209) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Sulfolipid biosynthesis protein SQD1 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1gqtb_ : (GLY5) (GLY65) [view usage] : c.72.1.1 |Ribokinase-like |Ribokinase-like |Ribokinase-like |Ribokinase |Escherichia coli [TaxId: 562]
d3gbua_ : (LEU3) (GLY57) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
d2djxa_ : (GLY38) (SER99) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |automated matches |Trypanosoma cruzi [TaxId: 5693]
d2i62a_ : (GLY192) (VAL238) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2okvb_ : (TYR72) (LYS126) [view usage] : c.110.1.0 |DTD-like |DTD-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gqta_ : (GLY5) (GLY65) [view usage] : c.72.1.1 |Ribokinase-like |Ribokinase-like |Ribokinase-like |Ribokinase |Escherichia coli [TaxId: 562]
d2bfga2 : (SER226) (GLU278) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Beta-D-xylosidase, catalytic domain |Bacillus stearothermophilus [TaxId: 1422]
d1px8a2 : (ASP223) (GLU277) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Beta-D-xylosidase, catalytic domain |Thermoanaerobacterium saccharolyticum [TaxId: 28896]
d2jlua1 : (GLY420) (SER475) [view usage] : c.37.1.14 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RNA helicase |automated matches |Dengue virus 4 [TaxId: 408688]
d1qrra_ : (CYS138) (GLN209) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Sulfolipid biosynthesis protein SQD1 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1i2ba_ : (CYS138) (GLN209) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Sulfolipid biosynthesis protein SQD1 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3pl2a_ : (GLU9) (ASN65) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Corynebacterium glutamicum [TaxId: 1718]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.2, c.66, c.72, c.23, c.37, d.104, b.121, c.110, b.16