Protein Concepts Dictionary

Tableau information

Concept source:  d1m3ea2  amino acid (a.a.) range (ASN356)(MSE402)

nSSEs in this Concept: 5

String of secondary struct.elems. (SSEs) defining this concept: EEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ASN356)  (GLY361) E1
	  (MSE363)  (LYS367) E2
	  (TYR368)  (TRP374) E3
	  (GLY386)  (SER392) H4
	  (LYS397)  (MSE402) E5

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                 
E2     -118.8°   E2                          
E3       60.5°  168.1°   E3                   
H4     -135.6°  -25.9°  161.5°   H4            
E5      -15.2° -124.2°   58.7° -133.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1soua_ :   (ILE115)  (TYR152)   [view usage] : c.124.1.6 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |Methenyltetrahydrofolate synthetase |Hypothetical protein aq_1731 |Aquifex aeolicus [TaxId: 63363]
 d1m3ea2 :   (ASN356)  (MSE402)   [view usage] : c.124.1.3 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase beta subunit-like |Succinate:CoA transferase, C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
 d2nrcb2 :   (ASP167)  (VAL206)   [view usage] : c.124.1.2 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase alpha subunit-like |Succinate:CoA transferase, N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
 d2nrbb1 :   (ASN356)  (MET402)   [view usage] : c.124.1.3 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase beta subunit-like |Succinate:CoA transferase, C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
 d2ahva2 :   (PHE185)  (VAL226)   [view usage] : c.124.1.2 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase alpha subunit-like |Putative enzyme YdiF N-terminal domain |Escherichia coli [TaxId: 562]
 d1o9la2 :   (ASN395)  (MET441)   [view usage] : c.124.1.3 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase beta subunit-like |Succinate:CoA transferase, C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
 d1poib_ :   (ARG101)  (GLN152)   [view usage] : c.124.1.3 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase beta subunit-like |Glutaconate:CoA transferase beta |Acidaminococcus fermentans [TaxId: 905]
 d1m3ea1 :   (ASP167)  (VAL206)   [view usage] : c.124.1.2 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase alpha subunit-like |Succinate:CoA transferase, N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
 d1m3eb2 :   (ASN356)  (MSE402)   [view usage] : c.124.1.3 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase beta subunit-like |Succinate:CoA transferase, C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
 d2nvva2 :   (ILE348)  (PRO394)   [view usage] : c.124.1.0 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |automated matches |automated matches |Porphyromonas gingivalis [TaxId: 242619]
 d1axja_ :    (GLY25)   (SER70)   [view usage] : b.45.1.1 |Split barrel-like |FMN-binding split barrel |PNP-oxidase like |FMN-binding protein |Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 c.124,    b.45