Tableau information
Concept source: d1qqga2 amino acid (a.a.) range (ALA203)(ASP262)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA203) (GLN207) E1
(ARG213) (GLU218) E2
(PHE220) (GLY226) E3
(GLY234) (VAL240) E4
(VAL245) (ASP262) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -122.8° E2
E3 64.1° 164.5° E3
E4 -112.0° -33.6° 161.3° E4
H5 -46.2° -165.6° 28.8° 135.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.5° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2gs0a_ : (ASP35) (ASP115) [view usage] : b.55.1.9 |PH domain-like barrel |PH domain-like |TFIIH domain |RNA polymerase II transcription factor B 73 kDa, TFB1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2coda1 : (TYR47) (GLN101) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Centaurin-delta 1 |Human (Homo sapiens) [TaxId: 9606]
d1fgub1 : (SER195) (PHE245) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Replication protein A 70 KDa subunit (RPA70) |Human (Homo sapiens) [TaxId: 9606]
d2cayb1 : (SER66) (LEU280) [view usage] : b.55.1.12 |PH domain-like barrel |PH domain-like |VPS36 N-terminal domain-like |Vacuolar protein sorting protein 36, VPS36 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3dcxb_ : (LYS63) (PHE122) [view usage] : b.55.1.13 |PH domain-like barrel |PH domain-like |BPHL domain |Uncharacterized protein Shew0819 |Shewanella loihica [TaxId: 359303]
d1eova1 : (GLU108) (SER159) [view usage] : b.40.4.1 |OB-fold |Nucleic acid-binding proteins |Anticodon-binding domain |Aspartyl-tRNA synthetase (AspRS) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1dbha2 : (LYS491) (TYR546) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Son of sevenless-1 (sos-1) |Human (Homo sapiens) [TaxId: 9606]
d2v76d_ : (LEU50) (ARG103) [view usage] : b.55.1.2 |PH domain-like barrel |PH domain-like |Phosphotyrosine-binding domain (PTB) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1mkea1 : (LEU91) (ARG143) [view usage] : b.55.1.4 |PH domain-like barrel |PH domain-like |Enabled/VASP homology 1 domain (EVH1 domain) |Actin regulatory protein WASP |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1tj6a1 : (ILE68) (LEU120) [view usage] : b.55.1.4 |PH domain-like barrel |PH domain-like |Enabled/VASP homology 1 domain (EVH1 domain) |Sprouty-related, EVH1 domain-containing protein 1, Spred-1 |Western clawed frog (Xenopus tropicalis) [TaxId: 8364]
d1xodb_ : (VAL68) (LEU120) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Western clawed frog (Xenopus tropicalis) [TaxId: 8364]
d1x3eb_ : (ASP4) (GLU69) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |automated matches |Mycobacterium smegmatis [TaxId: 1772]
d2lula_ : (TYR59) (GLU119) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2dfkc2 : (LYS310) (GLY381) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Rho guanine nucleotide exchange factor 9, Collybistin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1xd4a3 : (LYS491) (TYR546) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Son of sevenless-1 (sos-1) |Human (Homo sapiens) [TaxId: 9606]
d1jmca1 : (LYS196) (PHE245) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Replication protein A 70 KDa subunit (RPA70) |Human (Homo sapiens) [TaxId: 9606]
d4pnka3 : (GLN598) (VAL661) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1foea2 : (ARG1330) (GLN1401) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) |Mouse (Mus musculus) [TaxId: 10090]
d1fgua1 : (SER195) (PHE245) [view usage] : b.40.4.3 |OB-fold |Nucleic acid-binding proteins |Single strand DNA-binding domain, SSB |Replication protein A 70 KDa subunit (RPA70) |Human (Homo sapiens) [TaxId: 9606]
d1enaa_ : (LEU7) (ALA69) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
d1t77a2 : (HIS2130) (LEU2180) [view usage] : b.55.1.6 |PH domain-like barrel |PH domain-like |PreBEACH PH-like domain |Lipopolysaccharide-responsive and beige-like anchor protein LRBA |Human (Homo sapiens) [TaxId: 9606]
d1uefa_ : (LEU51) (ALA107) [view usage] : b.55.1.2 |PH domain-like barrel |PH domain-like |Phosphotyrosine-binding domain (PTB) |Docking protein 1, Dok1 |Mouse (Mus musculus) [TaxId: 10090]
d1mi1a2 : (HIS2194) (LEU2244) [view usage] : b.55.1.6 |PH domain-like barrel |PH domain-like |PreBEACH PH-like domain |PH-like domain of neurobeachin |Human (Homo sapiens) [TaxId: 9606]
d1asya1 : (GLU108) (LEU160) [view usage] : b.40.4.1 |OB-fold |Nucleic acid-binding proteins |Anticodon-binding domain |Aspartyl-tRNA synthetase (AspRS) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1lw3a1 : (PHE123) (PRO185) [view usage] : b.55.1.8 |PH domain-like barrel |PH domain-like |GRAM domain |Myotubularin-related protein 2, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1v5ua_ : (LYS50) (LEU110) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |SET binding factor 1, Sbf1 |Mouse (Mus musculus) [TaxId: 10090]
d1droa_ : (GLU64) (SER120) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |beta-spectrin |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.40, b.55