Tableau information
Concept source: d2m87a_ amino acid (a.a.) range (ASP4)(ALA45)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP4) (GLY10) E1
(ASN11) (ASN15) E2
(ARG19) (GLY24) E3
(THR26) (THR31) E4
(THR31) (ALA45) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 165.2° E2
E3 -26.0° 166.8° E3
E4 115.3° -49.9° 138.9° E4
H5 68.2° -116.8° 69.6° 119.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.5° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3g8za_ : (SER68) (PHE126) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Xanthomonas campestris [TaxId: 340]
d3ckga_ : (THR207) (LYS258) [view usage] : b.76.1.1 |open-sided beta-meander |Outer surface protein |Outer surface protein |automated matches |Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
d4fu4a2 : (ASP291) (TRP327) [view usage] : b.66.1.0 |4-bladed beta-propeller |Hemopexin-like domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4fu4a2 : (ALA433) (LEU469) [view usage] : b.66.1.0 |4-bladed beta-propeller |Hemopexin-like domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3q9sa2 : (GLU124) (ILE161) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Deinococcus radiodurans [TaxId: 1299]
d2zxja_ : (ASN133) (LYS171) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d1fbla1 : (ASP427) (PHE464) [view usage] : b.66.1.1 |4-bladed beta-propeller |Hemopexin-like domain |Hemopexin-like domain |Collagenase (MMP1), C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d1p4pa_ : (SER244) (ALA294) [view usage] : b.76.1.1 |open-sided beta-meander |Outer surface protein |Outer surface protein |Outer surface protein B |Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
d2dsoe_ : (ASP236) (THR283) [view usage] : b.68.6.1 |6-bladed beta-propeller |Calcium-dependent phosphotriesterase |SGL-like |automated matches |Staphylococcus aureus [TaxId: 1280]
d3ba0a2 : (ALA431) (PHE468) [view usage] : b.66.1.0 |4-bladed beta-propeller |Hemopexin-like domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3n3ka_ : (SER1057) (SER1098) [view usage] : d.3.1.9 |Cysteine proteinases |Cysteine proteinases |Ubiquitin carboxyl-terminal hydrolase, UCH |Ubiquitin carboxyl-terminal hydrolase 8 |Human (Homo sapiens) [TaxId: 9606]
d4nhjb_ : (LYS136) (ALA176) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 573]
d1itva_ : (HIS150) (GLN191) [view usage] : b.66.1.1 |4-bladed beta-propeller |Hemopexin-like domain |Hemopexin-like domain |Gelatinase B (MMP-9) |Human (Homo sapiens) [TaxId: 9606]
d1ck7a1 : (ASP618) (LEU658) [view usage] : b.66.1.1 |4-bladed beta-propeller |Hemopexin-like domain |Hemopexin-like domain |Gelatinase A (MMP-2), C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3ckfa_ : (SER198) (LYS250) [view usage] : b.76.1.1 |open-sided beta-meander |Outer surface protein |Outer surface protein |automated matches |Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
d2hqra2 : (VAL120) (ARG159) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Helicobacter pylori [TaxId: 85963]
d3q9va_ : (GLU124) (PRO164) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Deinococcus radiodurans [TaxId: 1299]
d2ebsb1 : (GLY15) (THR66) [view usage] : b.69.13.1 |7-bladed beta-propeller |Oligoxyloglucan reducing end-specific cellobiohydrolase |Oligoxyloglucan reducing end-specific cellobiohydrolase |automated matches |Geotrichum sp. [TaxId: 203496]
d2mlka_ : (THR137) (ALA176) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 573]
d4ixaa_ : (GLU129) (GLU169) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Staphylococcus epidermidis [TaxId: 176280]
d2prvb_ : (ILE90) (ASP143) [view usage] : d.369.1.1 |SMI1/KNR4-like |SMI1/KNR4-like |SMI1/KNR4-like |Uncharacterized protein YobK |Bacillus subtilis [TaxId: 1423]
d1odda_ : (ALA136) (PRO176) [view usage] : a.4.6.1 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |PhoB-like |OmpR |Escherichia coli [TaxId: 562]
d2clta1 : (ASP408) (PHE445) [view usage] : b.66.1.1 |4-bladed beta-propeller |Hemopexin-like domain |Hemopexin-like domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1h3ga2 : (ARG518) (LYS563) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Cyclomaltodextrinase |Flavobacterium sp. 92 [TaxId: 197856]
d1rjlc_ : (SER244) (LYS296) [view usage] : b.76.1.1 |open-sided beta-meander |Outer surface protein |Outer surface protein |Outer surface protein B |Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
d2pmua_ : (VAL149) (ALA189) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1su3a2 : (GLU329) (GLY369) [view usage] : b.66.1.1 |4-bladed beta-propeller |Hemopexin-like domain |Hemopexin-like domain |Collagenase (MMP1), C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3amra_ : (SER180) (LEU234) [view usage] : b.68.3.1 |6-bladed beta-propeller |Thermostable phytase (3-phytase) |Thermostable phytase (3-phytase) |automated matches |Bacillus subtilis [TaxId: 1423]
d2prva1 : (ILE90) (TRP144) [view usage] : d.369.1.1 |SMI1/KNR4-like |SMI1/KNR4-like |SMI1/KNR4-like |Uncharacterized protein YobK |Bacillus subtilis [TaxId: 1423]
d2giab1 : (LYS31) (GLU102) [view usage] : d.18.1.4 |ssDNA-binding transcriptional regulator domain |ssDNA-binding transcriptional regulator domain |Guide RNA binding protein gBP |GBP21 |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1gxdb2 : (ASP540) (TRP581) [view usage] : b.66.1.1 |4-bladed beta-propeller |Hemopexin-like domain |Hemopexin-like domain |Gelatinase A (MMP-2), C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1gxdb2 : (ASP589) (LEU629) [view usage] : b.66.1.1 |4-bladed beta-propeller |Hemopexin-like domain |Hemopexin-like domain |Gelatinase A (MMP-2), C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3zq7a_ : (PRO7) (ALA47) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2hwva_ : (HIS133) (ILE172) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Enterococcus faecalis [TaxId: 226185]
d4nhja_ : (THR137) (ALA176) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 573]
d1opca_ : (VAL137) (PRO176) [view usage] : a.4.6.1 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |PhoB-like |OmpR |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.69, b.76, d.3, d.17, a.4, b.71, b.66, d.18, d.369