Tableau information
Concept source: d3qimb_ amino acid (a.a.) range (ALA158)(GLY212)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA158) (THR162) E1
(PRO164) (LEU172) E2
(ASP176) (ARG180) E3
(LYS192) (VAL198) E4
(ASP201) (GLY212) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 155.7° E2
E3 -36.0° 161.1° E3
E4 131.6° -32.2° 166.5° E4
H5 -64.2° 116.7° -46.9° 141.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.5° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2aqna_ : (ALA32) (GLY102) [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Neisseria meningitidis [TaxId: 487]
d1ns8a_ : (SER2) (GLU56) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Lactococcus lactis [TaxId: 1358]
d4bgfc_ : (ALA145) (SER197) [view usage] : d.3.1.5 |Cysteine proteinases |Cysteine proteinases |Arylamine N-acetyltransferase |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1ns0b_ : (SER2) (GLU56) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Lactococcus lactis [TaxId: 1358]
d3cu9a_ : (VAL29) (TYR74) [view usage] : b.67.2.1 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |alpha-L-arabinanase-like |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
d3u5rh_ : (LYS26) (ILE77) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d2vfba_ : (THR145) (VAL196) [view usage] : d.3.1.5 |Cysteine proteinases |Cysteine proteinases |Arylamine N-acetyltransferase |automated matches |Mycobacterium marinum [TaxId: 1781]
d1ns4a_ : (SER2) (GLU56) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Lactococcus lactis [TaxId: 1358]
d1fftb1 : (GLY180) (SER241) [view usage] : b.6.1.2 |Cupredoxin-like |Cupredoxins |Periplasmic domain of cytochrome c oxidase subunit II |Quinol oxidase (CyoA) |Escherichia coli [TaxId: 562]
d2plga1 : (ALA40) (ASN99) [view usage] : d.198.1.2 |Secretion chaperone-like |Type III secretory system chaperone-like |Tll0839-like |Uncharacterized protein Tll0839 |Synechococcus elongatus [TaxId: 32046]
d1aoza3 : (ASN416) (SER471) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Ascorbate oxidase |Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]
d1ns8b_ : (SER2) (GLU56) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Lactococcus lactis [TaxId: 1358]
d2d0vi_ : (HIS52) (VAL101) [view usage] : b.70.1.1 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase-like |automated matches |Hyphomicrobium denitrificans [TaxId: 53399]
d1zlqa1 : (ALA158) (GLY212) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
d1h4ia_ : (ALA57) (VAL101) [view usage] : b.70.1.1 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase-like |Methanol dehydrogenase, heavy chain |Methylobacterium extorquens [TaxId: 408]
d2yntb_ : (ASP175) (TRP242) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1lrwa_ : (HIS52) (ALA102) [view usage] : b.70.1.1 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase-like |Methanol dehydrogenase, heavy chain |Paracoccus denitrificans [TaxId: 266]
d4guza_ : (ALA142) (SER204) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d3u5re_ : (LYS26) (ILE77) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d4bgfa_ : (ALA145) (SER197) [view usage] : d.3.1.5 |Cysteine proteinases |Cysteine proteinases |Arylamine N-acetyltransferase |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d2ebsb1 : (SER68) (ASN122) [view usage] : b.69.13.1 |7-bladed beta-propeller |Oligoxyloglucan reducing end-specific cellobiohydrolase |Oligoxyloglucan reducing end-specific cellobiohydrolase |automated matches |Geotrichum sp. [TaxId: 203496]
d1sqja1 : (SER68) (GLY123) [view usage] : b.69.13.1 |7-bladed beta-propeller |Oligoxyloglucan reducing end-specific cellobiohydrolase |Oligoxyloglucan reducing end-specific cellobiohydrolase |Oligoxyloglucan reducing end-specific cellobiohydrolase |Yeast (Geotrichum sp. M128) [TaxId: 203496]
d1sqja1 : (THR172) (PRO223) [view usage] : b.69.13.1 |7-bladed beta-propeller |Oligoxyloglucan reducing end-specific cellobiohydrolase |Oligoxyloglucan reducing end-specific cellobiohydrolase |Oligoxyloglucan reducing end-specific cellobiohydrolase |Yeast (Geotrichum sp. M128) [TaxId: 203496]
d1nsxb_ : (SER2) (GLU56) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Lactococcus lactis [TaxId: 1358]
d1nsub_ : (SER2) (GLU56) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Lactococcus lactis [TaxId: 1358]
d3qima_ : (ALA158) (GLY212) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
d1uiua_ : (ALA158) (GLY212) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
d3dp8c_ : (ALA158) (GLY212) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
d1ijjb1 : (THR406) (VAL443) [view usage] : c.55.1.1 |Ribonuclease H-like motif |Actin-like ATPase domain |Actin/HSP70 |Actin |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1vpra1 : (TYR1123) (LEU1190) [view usage] : b.60.1.7 |Lipocalins |Lipocalins |Dinoflagellate luciferase repeat |Dinoflagellate luciferase |Lingulodinium polyedrum [TaxId: 160621]
d1e2ta_ : (ILE140) (TRP194) [view usage] : d.3.1.5 |Cysteine proteinases |Cysteine proteinases |Arylamine N-acetyltransferase |Arylamine N-acetyltransferase |Salmonella typhimurium [TaxId: 90371]
d1ns2b_ : (SER2) (GLU56) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Lactococcus lactis [TaxId: 1358]
d1nsmb_ : (SER2) (GLU56) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Lactococcus lactis [TaxId: 1358]
d3e3kb_ : (ALA158) (GLY212) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
d4oera_ : (ALA156) (GLY210) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Brucella suis [TaxId: 29461]
d1w5ra1 : (PRO145) (HIS199) [view usage] : d.3.1.5 |Cysteine proteinases |Cysteine proteinases |Arylamine N-acetyltransferase |Arylamine N-acetyltransferase |Mycobacterium smegmatis [TaxId: 1772]
d1nsza_ : (SER2) (GLU56) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Lactococcus lactis [TaxId: 1358]
d1uiva_ : (ALA158) (GLY212) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
d1kv9a2 : (ARG56) (THR103) [view usage] : b.70.1.1 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase, N-terminal domain |Pseudomonas putida, hk5 [TaxId: 303]
d1w6sa_ : (ALA57) (VAL101) [view usage] : b.70.1.1 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase-like |Methanol dehydrogenase, heavy chain |Methylobacterium extorquens [TaxId: 408]
d2gbwc2 : (ASN295) (THR349) [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Sphingobium yanoikuyae [TaxId: 13690]
d3a0fa1 : (ILE177) (GLY231) [view usage] : b.69.13.0 |7-bladed beta-propeller |Oligoxyloglucan reducing end-specific cellobiohydrolase |automated matches |automated matches |Geotrichum sp. [TaxId: 203496]
d1l7kb_ : (SER2) (GLU56) [view usage] : b.30.5.4 |Supersandwich |Galactose mutarotase-like |Aldose 1-epimerase (mutarotase) |Galactose mutarotase |Lactococcus lactis [TaxId: 1358]
d4tqoa_ : (ALA85) (VAL129) [view usage] : b.70.1.1 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase-like |automated matches |Methylococcus capsulatus [TaxId: 243233]
d4dcxb_ : (ALA158) (GLY212) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
d3d9wb_ : (ASP154) (SER211) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Nocardia farcinica [TaxId: 37329]
d2apsa_ : (GLU13) (GLY83) [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Actinobacillus pleuropneumoniae [TaxId: 715]
d2aqra_ : (ALA32) (GLY102) [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Neisseria meningitidis [TaxId: 487]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, c.94, b.69, b.67, b.30, d.157, d.129, c.47, c.55, b.60, d.3, b.6, b.1, d.198