Tableau information
Concept source: d2i8da1 amino acid (a.a.) range (GLN33)(PHE74)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN33) (PHE38) E1
(GLN42) (ASP47) E2
(ILE52) (PRO57) E3
(LEU62) (GLU67) E4
(GLU67) (PHE74) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 162.0° E2
E3 -38.0° 159.6° E3
E4 118.2° -45.6° 153.9° E4
H5 -109.7° 85.3° -81.1° 106.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2aqpa_ : (ALA32) (ALA128) [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Neisseria meningitidis [TaxId: 487]
d1fx5b_ : (ILE52) (PHE136) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Furze (Ulex europaeus), UEA-I [TaxId: 3902]
d1kzqa1 : (GLN8) (TYR47) [view usage] : b.6.2.1 |Cupredoxin-like |Major surface antigen p30, SAG1 |Major surface antigen p30, SAG1 |Major surface antigen p30, SAG1 |Toxoplasma gondii [TaxId: 5811]
d1cj5a_ : (ALA80) (ASP137) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |beta-Lactoglobulin |Cow (Bos taurus) [TaxId: 9913]
d4h25b1 : (PRO5) (ARG55) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gzqa2 : (THR8) (GLY56) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |CD1, alpha-1 and alpha-2 domains |Human (Homo sapiens), CD1b [TaxId: 9606]
d2a8ea1 : (GLU52) (ASN120) [view usage] : d.296.1.1 |YktB/PF0168-like |YktB/PF0168-like |YktB-like |Hypothetical protein YktB |Bacillus subtilis [TaxId: 1423]
d1acmb2 : (GLU101) (LEU151) [view usage] : g.41.7.1 |Rubredoxin-like |Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain |Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain |Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain |Escherichia coli [TaxId: 562]
d1r5ia2 : (GLU4) (ALA52) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Class II MHC alpha chain, N-terminal domain |Human (Homo sapiens), HLA-DR2 [TaxId: 9606]
d3rurc_ : (ILE405) (LYS456) [view usage] : b.1.28.0 |Immunoglobulin-like beta-sandwich |NEAT domain-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 158879]
d4mzya2 : (ASP346) (GLU392) [view usage] : c.1.17.1 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |NadC C-terminal domain-like |Putative nicotinate phosphoribosyltransferase EF2626 |Enterococcus faecalis [TaxId: 1351]
d3rura_ : (ILE405) (THR455) [view usage] : b.1.28.0 |Immunoglobulin-like beta-sandwich |NEAT domain-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 158879]
d1r46a1 : (GLY325) (ALA381) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Melibiase |Human (Homo sapiens) [TaxId: 9606]
d1kuua_ : (ARG5) (PRO55) [view usage] : d.153.2.1 |Ntn hydrolase-like |Archaeal IMP cyclohydrolase PurO |Archaeal IMP cyclohydrolase PurO |Hypothetical protein MTH1020 |Methanothermobacter thermautotrophicus [TaxId: 145262]
d1w62a_ : (ASN183) (SER254) [view usage] : d.21.1.0 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
d1bx2a2 : (GLU4) (ALA52) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Class II MHC alpha chain, N-terminal domain |Human (Homo sapiens), HLA-DR2 [TaxId: 9606]
d1pm4a_ : (GLY71) (LEU126) [view usage] : b.135.1.1 |Superantigen (mitogen) Ypm |Superantigen (mitogen) Ypm |Superantigen (mitogen) Ypm |Superantigen (mitogen) Ypm |Yersinia pseudotuberculosis [TaxId: 633]
d1cb8a3 : (PRO338) (GLY386) [view usage] : b.30.5.2 |Supersandwich |Galactose mutarotase-like |Hyaluronate lyase-like, central domain |Chondroitinase AC |Pedobacter heparinus (Flavobacterium heparinum) [TaxId: 984]
d1neza2 : (GLY1) (GLU55) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Class I MHC, alpha-1 and alpha-2 domains |Mouse (Mus musculus), tla(c), H-2 class [TaxId: 10090]
d1yupc_ : (LYS65) (LEU117) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Reindeer (Rangifer tarandus) [TaxId: 9870]
d4ibza_ : (SER215) (GLU287) [view usage] : b.2.5.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |p53 DNA-binding domain-like |p53 tumor suppressor, DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d2i8da1 : (GLN33) (PHE74) [view usage] : d.198.4.1 |Secretion chaperone-like |YdhG-like |YdhG-like |Uncharacterized protein LSEI2283 |Lactobacillus casei [TaxId: 1582]
d1yupe_ : (LYS65) (LEU117) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |beta-Lactoglobulin |Reindeer (Rangifer tarandus) [TaxId: 9870]
d2kl4a_ : (ASN36) (ALA78) [view usage] : d.198.4.1 |Secretion chaperone-like |YdhG-like |YdhG-like |automated matches |Bacillus halodurans [TaxId: 86665]
d4p2ch_ : (GLN44) (VAL92) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d2p3ya1 : (GLN87) (GLY150) [view usage] : e.65.1.1 |VPA0735-like |VPA0735-like |VPA0735-like |Hypothetical protein VPA0735 |Vibrio parahaemolyticus [TaxId: 670]
d2hmja2 : (ASN297) (ARG350) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |Naphthalene 1,2-dioxygenase alpha subunit, C-domain |Pseudomonas sp. [TaxId: 306]
d4ifsa_ : (ARG241) (GLU299) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2xhia1 : (ARG46) (PHE100) [view usage] : d.129.1.0 |TBP-like |TATA-box binding protein-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1j2ea1 : (GLU408) (GLN455) [view usage] : b.70.3.1 |8-bladed beta-propeller |DPP6 N-terminal domain-like |DPP6 N-terminal domain-like |Dipeptidyl peptidase IV/CD26, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3dsda_ : (GLU112) (ASN154) [view usage] : d.159.1.4 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |DNA double-strand break repair nuclease |Mre11 |Pyrococcus furiosus [TaxId: 2261]
d3rtlb_ : (GLN400) (ASN458) [view usage] : b.1.28.0 |Immunoglobulin-like beta-sandwich |NEAT domain-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 158879]
d1p4la2 : (PRO2) (GLU55) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Class I MHC, alpha-1 and alpha-2 domains |Mouse (Mus musculus), H-2KB [TaxId: 10090]
d1kd6a_ : (ALA70) (SER141) [view usage] : b.97.1.1 |Cytolysin/lectin |Cytolysin/lectin |Anemone pore-forming cytolysin |Equinatoxin II (eqtII, tenebrosin C) |European sea anemone (Actinia equina) [TaxId: 6106]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, c.1, d.159, b.29, b.30, d.129, d.153, b.60, b.2, b.6, b.1, d.21, d.19, b.55, b.97, b.71, d.198, g.41, e.65, d.296,
b.135