Tableau information
Concept source: d3cupa1 amino acid (a.a.) range (THR10)(LEU51)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR10) (SER15) E1
(ILE19) (ASP27) E2
(LEU31) (ASP37) E3
(LYS40) (ARG44) E4
(PRO46) (LEU51) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 161.7° E2
E3 -31.6° 165.7° E3
E4 120.1° -42.1° 147.4° E4
H5 -113.7° 83.2° -87.4° 124.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2fgqx_ : (GLY40) (ASP105) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |automated matches |Delftia acidovorans [TaxId: 80866]
d3ac0b1 : (TRP28) (SER72) [view usage] : c.1.8.7 |TIM beta/alpha-barrel |(Trans)glycosidases |NagZ-like |Beta-glucosidase |Kluyveromyces marxianus [TaxId: 4911]
d1nywb_ : (ASN107) (TYR154) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-dehydrorhamnose 3,5-epimerase RmlC |Streptococcus suis [TaxId: 1307]
d4dipa_ : (PRO25) (ASN71) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3bb6a1 : (GLN65) (MSE106) [view usage] : b.82.2.13 |Double-stranded beta-helix |Clavaminate synthase-like |TehB-like |Uncharacterized protein YeaR |Escherichia coli [TaxId: 562]
d1e54a_ : (GLY40) (ASP105) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Comamonas acidovorans [TaxId: 80866]
d1y4wa2 : (GLY282) (ILE341) [view usage] : b.67.2.3 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Glycosyl hydrolases family 32 N-terminal domain |Exo-inulinase |Aspergillus awamori [TaxId: 105351]
d4hd0a_ : (GLU112) (ALA153) [view usage] : d.159.1.4 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |DNA double-strand break repair nuclease |Mre11 |Pyrococcus furiosus [TaxId: 2261]
d3b07b_ : (GLU147) (VAL192) [view usage] : f.6.1.1 |Leukocidin-like |Leukocidin-like |Leukocidin (pore-forming toxin) |automated matches |Staphylococcus aureus [TaxId: 158878]
d1aoza3 : (ASN476) (GLY516) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Ascorbate oxidase |Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]
d1uvqa2 : (ASP6) (PHE54) [view usage] : d.19.1.1 |MHC antigen-recognition domain |MHC antigen-recognition domain |MHC antigen-recognition domain |Class II MHC alpha chain, N-terminal domain |Human (Homo sapiens), HLA-DQ6 [TaxId: 9606]
d1udoa1 : (PRO13) (VAL102) [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Ribonuclease PH, domain 1 |Aquifex aeolicus [TaxId: 63363]
d2ee2a_ : (GLN15) (ALA64) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2fgra_ : (GLY40) (LEU106) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |automated matches |Delftia acidovorans [TaxId: 80866]
d4dipi_ : (PRO25) (ASN71) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4ffva1 : (PRO247) (THR293) [view usage] : b.70.3.1 |8-bladed beta-propeller |DPP6 N-terminal domain-like |DPP6 N-terminal domain-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3bb6b_ : (ASP64) (MSE106) [view usage] : b.82.2.13 |Double-stranded beta-helix |Clavaminate synthase-like |TehB-like |Uncharacterized protein YeaR |Escherichia coli [TaxId: 562]
d1qi9a_ : (GLU516) (VAL556) [view usage] : a.111.1.2 |Acid phosphatase/Vanadium-dependent haloperoxidase |Acid phosphatase/Vanadium-dependent haloperoxidase |Haloperoxidase (bromoperoxidase) |Haloperoxidase (bromoperoxidase) |Ascophyllum nodosum [TaxId: 52969]
d2oc6a1 : (ASN33) (VAL74) [view usage] : d.198.4.1 |Secretion chaperone-like |YdhG-like |YdhG-like |Uncharacterized protein YdhG |Bacillus subtilis [TaxId: 1423]
d3qyna_ : (SER246) (SER319) [view usage] : b.2.5.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |p53 DNA-binding domain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3abza1 : (TRP28) (SER72) [view usage] : c.1.8.7 |TIM beta/alpha-barrel |(Trans)glycosidases |NagZ-like |Beta-glucosidase |Kluyveromyces marxianus [TaxId: 4911]
d1oyra1 : (PRO13) (GLY81) [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Ribonuclease PH, domain 1 |Bacillus subtilis [TaxId: 1423]
d1sqja1 : (MET235) (ASN288) [view usage] : b.69.13.1 |7-bladed beta-propeller |Oligoxyloglucan reducing end-specific cellobiohydrolase |Oligoxyloglucan reducing end-specific cellobiohydrolase |Oligoxyloglucan reducing end-specific cellobiohydrolase |Yeast (Geotrichum sp. M128) [TaxId: 203496]
d4oeta_ : (ASN156) (GLY210) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Campylobacter jejuni [TaxId: 192222]
d3exja_ : (MET120) (VAL169) [view usage] : b.2.5.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |p53 DNA-binding domain-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1c9ia2 : (PRO6) (PRO61) [view usage] : b.69.6.1 |7-bladed beta-propeller |Clathrin heavy-chain terminal domain |Clathrin heavy-chain terminal domain |Clathrin heavy-chain terminal domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4bqxa_ : (ALA351) (LYS402) [view usage] : b.82.2.15 |Double-stranded beta-helix |Clavaminate synthase-like |proly-4-hydroxylase (P4H, PHD) like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gpca_ : (GLY29) (PRO88) [view usage] : b.40.4.7 |OB-fold |Nucleic acid-binding proteins |Phage ssDNA-binding proteins |Gene 32 protein (gp32) core |Bacteriophage T4 [TaxId: 10665]
d1udsa1 : (PRO13) (VAL102) [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Ribonuclease PH, domain 1 |Aquifex aeolicus [TaxId: 63363]
d3exla_ : (MET120) (VAL169) [view usage] : b.2.5.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |p53 DNA-binding domain-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1z01a2 : (HIS291) (ASP350) [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO |Pseudomonas putida [TaxId: 303]
d1udqa1 : (PRO13) (VAL102) [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Ribonuclease PH, domain 1 |Aquifex aeolicus [TaxId: 63363]
d2g19a_ : (ALA351) (TYR403) [view usage] : b.82.2.15 |Double-stranded beta-helix |Clavaminate synthase-like |proly-4-hydroxylase (P4H, PHD) like |HIF-P4H2, PHD2 |Human (Homo sapiens) [TaxId: 9606]
d1hqmc_ : (VAL146) (GLY201) [view usage] : i.8.1.1 |RNA polymerase |RNA polymerase |RNA polymerase |DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits |Thermus aquaticus [TaxId: 271]
d1kfia4 : (SER495) (GLU541) [view usage] : d.129.2.1 |TBP-like |Phosphoglucomutase, C-terminal domain |Phosphoglucomutase, C-terminal domain |Exocytosis-sensitive phosphoprotein, pp63/parafusin |Ciliate (Paramecium tetraurelia) [TaxId: 5888]
d3ppsa3 : (PRO474) (GLY512) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Thielavia arenaria [TaxId: 113610]
d3dkha3 : (ASP471) (GLY511) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |Laccase |Fungus (Melanocarpus albomyces) [TaxId: 204285]
d2jlpb_ : (THR40) (GLY111) [view usage] : b.1.8.0 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2gidb1 : (LYS31) (GLU102) [view usage] : d.18.1.4 |ssDNA-binding transcriptional regulator domain |ssDNA-binding transcriptional regulator domain |Guide RNA binding protein gBP |GBP21 |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d3gcfa2 : (GLN265) (GLU323) [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Nocardioides aromaticivorans [TaxId: 200618]
d1jofa_ : (SER43) (ASP89) [view usage] : b.69.10.1 |7-bladed beta-propeller |3-carboxy-cis,cis-mucoante lactonizing enzyme |3-carboxy-cis,cis-mucoante lactonizing enzyme |3-carboxy-cis,cis-mucoante lactonizing enzyme |Fungus (Neurospora crassa) [TaxId: 5141]
d3uamc_ : (GLN102) (ILE172) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 320372]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, c.1, b.82, c.94, d.159, b.69, b.67, d.129, f.4, b.40, d.14, b.2, b.6, b.1, d.19, a.111, i.8, d.26, d.198, f.6,
d.18