Tableau information
Concept source: d1qbmh2 amino acid (a.a.) range (GLY166)(PRO216)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY166) (PHE170) E1
(PRO171) (GLN175) E2
(LEU178) (PRO188) E3
(GLN195) (PRO204) E4
(SER207) (PRO216) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 34.0° E2
E3 168.8° 141.8° E3
E4 -34.8° -65.5° 152.6° E4
E5 125.0° 99.2° -45.4° 157.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1gmma_ : (ASN13) (ARG72) [view usage] : b.18.1.10 |Galactose-binding domain-like |Galactose-binding domain-like |Family 6 carbohydrate binding module, CBM6 |Carbohydrate binding module from xylanase U |Clostridium thermocellum [TaxId: 1515]
d3r19a2 : (VAL347) (VAL394) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d2mspa_ : (GLY7) (PRO57) [view usage] : b.1.11.2 |Immunoglobulin-like beta-sandwich |PapD-like |MSP-like |Major sperm protein, MSP |Pig roundworm (Ascaris suum), alpha isoform [TaxId: 6253]
d3c6ea2 : (GLY349) (LYS394) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Dengue virus 2 thailand/16681/84 [TaxId: 31634]
d3r18a2 : (VAL347) (GLY399) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1jrkd_ : (LEU75) (ASP112) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |Hypothetical protein PAE3301 |Pyrobaculum aerophilum [TaxId: 13773]
d3p73b_ : (GLY48) (PRO97) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1ix2a_ : (LYS6) (PRO61) [view usage] : b.1.18.17 |Immunoglobulin-like beta-sandwich |E set domains |Copper resistance protein C (CopC, PcoC) |Copper resistance protein C (CopC, PcoC) |Escherichia coli [TaxId: 562]
d1s4ef1 : (ILE4) (THR59) [view usage] : d.14.1.5 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |GHMP Kinase, N-terminal domain |Galactokinase |Pyrococcus furiosus [TaxId: 2261]
d3ncxa1 : (GLU749) (ALA808) [view usage] : b.1.14.0 |Immunoglobulin-like beta-sandwich |Invasin/intimin cell-adhesion fragments |automated matches |automated matches |Escherichia coli [TaxId: 544404]
d4kkna_ : (GLY35) (MET88) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Cow (Bos taurus) [TaxId: 9913]
d2giya1 : (THR223) (TYR277) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Alphaherpesvirus glycoprotein E |Human herpesvirus 1 [TaxId: 10298]
d4ktyb4 : (PRO675) (GLN726) [view usage] : b.1.5.0 |Immunoglobulin-like beta-sandwich |Transglutaminase, two C-terminal domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1yq2a4 : (ARG906) (PRO949) [view usage] : b.30.5.1 |Supersandwich |Galactose mutarotase-like |beta-Galactosidase, domain 5 |beta-Galactosidase, domain 5 |Arthrobacter sp. c2-2 [TaxId: 192168]
d1bvza1 : (ALA53) (GLU98) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Maltogenic amylase, N-terminal domain N |Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
d1qksa2 : (PRO296) (SER339) [view usage] : b.70.2.1 |8-bladed beta-propeller |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |Paracoccus denitrificans [TaxId: 266]
d1f97a1 : (LYS27) (LEU71) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Junction adhesion molecule, JAM, N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d1wv3a2 : (THR135) (SER175) [view usage] : b.26.1.4 |SMAD/FHA domain |SMAD/FHA domain |EssC N-terminal domain-like |Protein EssC |Staphylococcus aureus [TaxId: 1280]
d1nldh2 : (SER120) (SER172) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus) [TaxId: 10090]
d2wgqa4 : (ALA426) (THR487) [view usage] : b.30.2.1 |Supersandwich |Amine oxidase catalytic domain |Amine oxidase catalytic domain |Copper amine oxidase, domain 3 |Escherichia coli [TaxId: 562]
d1p42a1 : (GLU4) (PRO47) [view usage] : d.14.1.7 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |Aquifex aeolicus [TaxId: 63363]
d3wjba_ : (GLN113) (LEU163) [view usage] : b.60.1.8 |Lipocalins |Lipocalins |Rv2717c-like |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3eubb2 : (ASP415) (LYS468) [view usage] : d.87.2.0 |CO dehydrogenase flavoprotein C-domain-like |CO dehydrogenase flavoprotein C-terminal domain-like |automated matches |automated matches |Cow (Bos taurus) [TaxId: 9913]
d1ix2b_ : (HIS2) (PRO61) [view usage] : b.1.18.17 |Immunoglobulin-like beta-sandwich |E set domains |Copper resistance protein C (CopC, PcoC) |Copper resistance protein C (CopC, PcoC) |Escherichia coli [TaxId: 562]
d1xxea1 : (LEU3) (PRO47) [view usage] : d.14.1.7 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |Aquifex aeolicus [TaxId: 63363]
d3oskb_ : (MET3) (TYR54) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2wlia2 : (GLY141) (ASP197) [view usage] : b.1.18.16 |Immunoglobulin-like beta-sandwich |E set domains |Cytoplasmic domain of inward rectifier potassium channel |automated matches |Magnetospirillum magnetotacticum [TaxId: 188]
d3esgb_ : (SER2) (ALA57) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Pseudomonas fluorescens [TaxId: 216595]
d2gj7e1 : (THR223) (TYR277) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Alphaherpesvirus glycoprotein E |Human herpesvirus 1 [TaxId: 10298]
d1lo4h2 : (GLY167) (LYS214) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus) [TaxId: 10090]
d3s48b_ : (LEU168) (ALA220) [view usage] : b.1.28.1 |Immunoglobulin-like beta-sandwich |NEAT domain-like |NEAT domain |automated matches |Staphylococcus aureus [TaxId: 282459]
d2x44d_ : (MET3) (TYR54) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4hhva_ : (PRO23) (CYS65) [view usage] : b.55.1.0 |PH domain-like barrel |PH domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2iera1 : (GLU4) (PRO47) [view usage] : d.14.1.7 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |Aquifex aeolicus [TaxId: 63363]
d2dwxc_ : (THR578) (ASP628) [view usage] : b.1.10.2 |Immunoglobulin-like beta-sandwich |Clathrin adaptor appendage domain |gamma-adaptin C-terminal appendage domain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4f32a2 : (GLY369) (PRO422) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Burkholderia vietnamiensis [TaxId: 269482]
d1fneb1 : (GLY141) (TRP188) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Class II MHC beta chain, C-terminal domain |Mouse (Mus musculus), I-E group [TaxId: 10090]
d1ex0b3 : (PRO675) (ARG727) [view usage] : b.1.5.1 |Immunoglobulin-like beta-sandwich |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Human (Homo sapiens), blood isozyme [TaxId: 9606]
d4ktya4 : (PRO675) (VAL723) [view usage] : b.1.5.0 |Immunoglobulin-like beta-sandwich |Transglutaminase, two C-terminal domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1nfda2 : (ASN120) (LYS165) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |T-cell antigen receptor |Mouse (Mus musculus), alpha-chain [TaxId: 10090]
d1ce1h2 : (GLY170) (LYS218) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Human (Homo sapiens) [TaxId: 9606]
d1nbqa1 : (GLY27) (CYS74) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Junction adhesion molecule, JAM, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3hb6a_ : (GLY57) (GLY126) [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |Catalase I |Proteus mirabilis [TaxId: 584]
d2p5eb_ : (LYS48) (LYS94) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Human (Homo sapiens) [TaxId: 9606]
d1vlla_ : (ALA36) (SER89) [view usage] : c.2.1.13 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Ornithine cyclodeaminase-like |Archaeal alanine dehydrogenase |Archaeoglobus fulgidus [TaxId: 2234]
d3uypb_ : (GLY349) (LYS394) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Dengue virus 4 [TaxId: 11070]
d1dfca2 : (ASN1143) (ALA1204) [view usage] : b.42.5.1 |beta-Trefoil |Actin-crosslinking proteins |Fascin |Fascin |Human (Homo sapiens) [TaxId: 9606]
d1ayoa_ : (VAL79) (ALA129) [view usage] : b.1.29.1 |Immunoglobulin-like beta-sandwich |Macroglobulin |Alpha-macroglobulin receptor domain |alpha-2-macroglobulin |Cow (Bos taurus) [TaxId: 9913]
d4lmfa1 : (GLY65) (ALA114) [view usage] : b.23.1.1 |CUB-like |Spermadhesin, CUB domain |Spermadhesin, CUB domain |Complement C1S component |Human (Homo sapiens) [TaxId: 9606]
d2vzoa4 : (LYS714) (LYS770) [view usage] : b.1.4.0 |Immunoglobulin-like beta-sandwich |beta-Galactosidase/glucuronidase domain |automated matches |automated matches |Amycolatopsis orientalis [TaxId: 31958]
d1i85c_ : (MET3) (TYR54) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoreceptor CTLA-4 (CD152), N-terminal fragment |Human (Homo sapiens) [TaxId: 9606]
d1soxa1 : (VAL347) (GLY399) [view usage] : b.1.18.6 |Immunoglobulin-like beta-sandwich |E set domains |Molybdenum-containing oxidoreductases-like dimerisation domain |Sulfite oxidase, C-terminal domain |Chicken (Gallus gallus) [TaxId: 9031]
d1f13a3 : (PRO675) (ARG727) [view usage] : b.1.5.1 |Immunoglobulin-like beta-sandwich |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Human (Homo sapiens), blood isozyme [TaxId: 9606]
d1wbfa_ : (LYS1) (ASN44) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Winged bean (Psophocarpus tetragonolobus), basic agglutinin [TaxId: 3891]
d2f53b1 : (LYS48) (ARG97) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Human (Homo sapiens) [TaxId: 9606]
d1avba_ : (SER42) (VAL120) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Phytohemagglutinin-L, PHA-L, also arcelin |French bean (Phaseolus vulgaris) [TaxId: 3885]
d3esga_ : (ALA3) (ALA57) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Pseudomonas fluorescens [TaxId: 216595]
d1ymme2 : (GLY173) (GLY245) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |T-cell antigen receptor |Human (Homo sapiens), beta-chain [TaxId: 9606]
d4bfld1 : (GLY131) (GLY200) [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |Catalase II |Escherichia coli, HPII [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, e.5, b.82, c.2, b.29, b.30, c.95, b.60, b.18, d.14, b.1, b.42, b.55, d.87, b.26, d.113, b.23