Tableau information
Concept source: d1a6vi_ amino acid (a.a.) range (THR369)(SER419)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR369) (PRO375) E1
(THR378) (SER384) E2
(ALA392) (ASP400) E3
(ASP408) (GLN412) E4
(GLY413) (SER419) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 154.9° E2
E3 -55.1° 142.7° E3
E4 97.9° -61.1° 152.5° E4
E5 134.2° -21.0° 154.7° -42.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1pgua1 : (THR69) (GLN113) [view usage] : b.69.4.1 |7-bladed beta-propeller |WD40 repeat-like |WD40-repeat |Actin interacting protein 1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3cqoa1 : (VAL100) (THR150) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Morone saxatilis [TaxId: 34816]
d1pi6a1 : (THR69) (GLN113) [view usage] : b.69.4.1 |7-bladed beta-propeller |WD40 repeat-like |WD40-repeat |Actin interacting protein 1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4fqxc2 : (PRO147) (LEU200) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ngwb1 : (LYS67) (SER113) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
d3dvga1 : (SER63) (ILE108) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
d3n1pc_ : (LYS764) (THR809) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3qhtc_ : (SER43) (ASN91) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Artificial gene [TaxId: 32630]
d3d2lc_ : (GLY148) (PRO201) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Exiguobacterium sibiricum [TaxId: 262543]
d4hija1 : (ALA9) (GLY68) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1f42a1 : (ILE1) (GLN56) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1xrua1 : (SER148) (GLU199) [view usage] : b.82.1.13 |Double-stranded beta-helix |RmlC-like cupins |KduI-like |5-keto-4-deoxyuronate isomerase KduI |Escherichia coli [TaxId: 562]
d1fnfa4 : (SER1458) (THR1509) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Fibronectin, different Fn3 modules |Human (Homo sapiens) [TaxId: 9606]
d3etpa_ : (GLU52) (ASP104) [view usage] : b.18.1.4 |Galactose-binding domain-like |Galactose-binding domain-like |Ephrin receptor ligand binding domain |Ligand-binding domain of the ephb2 receptor tyrosine kinase |Mouse (Mus musculus) [TaxId: 10090]
d1u4fa_ : (ASP291) (ASN352) [view usage] : b.1.18.16 |Immunoglobulin-like beta-sandwich |E set domains |Cytoplasmic domain of inward rectifier potassium channel |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1cdba_ : (ASN5) (LYS57) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |CD2, first domain |Human (Homo sapiens) [TaxId: 9606]
d2ibba2 : (ASN515) (PRO572) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Hedgehog receptor iHog |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2q3za1 : (VAL93) (PHE139) [view usage] : b.1.18.9 |Immunoglobulin-like beta-sandwich |E set domains |Transglutaminase N-terminal domain |Transglutaminase N-terminal domain |Human (Homo sapiens), tissue isozyme [TaxId: 9606]
d1lgqa_ : (HIS60) (SER124) [view usage] : b.26.1.2 |SMAD/FHA domain |SMAD/FHA domain |FHA domain |Cell cycle checkpoint protein Chfr |Human (Homo sapiens) [TaxId: 9606]
d2jjvb_ : (ARG59) (VAL114) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4tw1d_ : (HIS280) (ASN318) [view usage] : f.6.1.0 |Leukocidin-like |Leukocidin-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 451516]
d2d9qb1 : (GLY49) (ALA96) [view usage] : b.1.1.3 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C2 set domains |Granulocyte colony-stimulating factor (GC-SF) receptor, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1ow0c2 : (GLN147) (VAL194) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Ig alpha Fc receptor, FCARI (CD89) |Human (Homo sapiens) [TaxId: 9606]
d3jqwb_ : (VAL935) (GLY977) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Clostridium histolyticum [TaxId: 1498]
d3dvna1 : (SER9) (GLY68) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
d3d2la_ : (GLY148) (PRO201) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Exiguobacterium sibiricum [TaxId: 262543]
d2quxa_ : (ARG24) (ASN93) [view usage] : d.85.1.1 |RNA bacteriophage capsid protein |RNA bacteriophage capsid protein |RNA bacteriophage capsid protein |automated matches |Pseudomonas phage [TaxId: 12023]
d3bi9x_ : (GLU3) (LYS67) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1xq4b_ : (GLN76) (MSE126) [view usage] : b.1.23.1 |Immunoglobulin-like beta-sandwich |ApaG-like |ApaG-like |ApaG |Bordetella pertussis [TaxId: 520]
d3k2mc_ : (GLN51) (ASN97) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1pdpa_ : (GLY185) (GLY241) [view usage] : i.19.1.1 |Bacteriophage T4 3D cryo-EM reconstruction |Bacteriophage T4 3D cryo-EM reconstruction |Bacteriophage T4 3D cryo-EM reconstruction |Bacteriophage T4 3D cryo-EM reconstruction |Bacteriophage T4 [TaxId: 10665]
d2om5a2 : (ARG152) (ALA201) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4oclc_ : (GLN4) (ARG53) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d1dwna_ : (ASP23) (VAL91) [view usage] : d.85.1.1 |RNA bacteriophage capsid protein |RNA bacteriophage capsid protein |RNA bacteriophage capsid protein |PP7 coat protein |Bacteriophage PP7 [TaxId: 12023]
d2fnja1 : (THR191) (PRO236) [view usage] : b.29.1.22 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |SPRY domain |LD34464p |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.82, b.69, b.29, c.66, b.18, b.1, b.26, d.85, f.6, i.19