Tableau information
Concept source: d1ypze2 amino acid (a.a.) range (GLU148)(SER201)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU148) (ARG154) E1
(ILE159) (ILE168) E2
(TYR174) (GLY180) E3
(VAL188) (HIS194) E4
(GLU197) (SER201) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 148.7° E2
E3 -30.0° 166.8° E3
E4 161.3° -41.3° 146.6° E4
E5 -42.3° 116.8° -52.4° 155.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4e4ja_ : (GLU298) (LYS353) [view usage] : d.126.1.0 |Pentein, beta/alpha-propeller |Pentein |automated matches |automated matches |Mycoplasma penetrans [TaxId: 272633]
d1ms1a1 : (GLY515) (ILE560) [view usage] : b.29.1.15 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Trypanosoma sialidase, C-terminal domain |Trypanosoma sialidase, C-terminal domain |Trypanosoma cruzi [TaxId: 5693]
d3dosa2 : (GLY180) (LYS231) [view usage] : b.7.2.1 |C2 domain-like |Periplasmic chaperone C-domain |Periplasmic chaperone C-domain |Caf1m |Yersinia pestis [TaxId: 632]
d3dema3 : (TYR227) (ALA277) [view usage] : b.23.1.0 |CUB-like |Spermadhesin, CUB domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2fbea1 : (ARG129) (ASN188) [view usage] : b.29.1.22 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |SPRY domain |Similar to Ret finger protein-like 1 |Human (Homo sapiens) [TaxId: 9606]
d1qxta_ : (TYR143) (ALA226) [view usage] : d.22.1.1 |GFP-like |GFP-like |Fluorescent proteins |Green fluorescent protein, GFP |Jellyfish (Aequorea victoria) [TaxId: 6100]
d2lm3a_ : (ASP440) (PRO495) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Rhesus monkey (Macaca mulatta) [TaxId: 9544]
d1yhia_ : (TYR143) (ALA226) [view usage] : d.22.1.1 |GFP-like |GFP-like |Fluorescent proteins |automated matches |Jellyfish (Aequorea victoria) [TaxId: 6100]
d4n7ua_ : (LYS429) (ILE480) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2awja_ : (TYR143) (ALA226) [view usage] : d.22.1.1 |GFP-like |GFP-like |Fluorescent proteins |Green fluorescent protein, GFP |Jellyfish (Aequorea victoria) [TaxId: 6100]
d2gbca1 : (THR219) (PRO288) [view usage] : b.70.3.1 |8-bladed beta-propeller |DPP6 N-terminal domain-like |DPP6 N-terminal domain-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2xg4b_ : (ASN115) (ASP171) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |PAP fimbrial minor pilin protein PapH |Escherichia coli [TaxId: 562]
d1ie5a_ : (PRO41) (ALA106) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Neural cell adhesion molecule (NCAM) |Chicken (Gallus gallus) [TaxId: 9031]
d1jpca_ : (SER51) (THR99) [view usage] : b.78.1.1 |beta-Prism II |alpha-D-mannose-specific plant lectins |alpha-D-mannose-specific plant lectins |Lectin (agglutinin) |Snowdrop (Galanthus nivalis) [TaxId: 4670]
d2o6pa1 : (THR79) (GLY144) [view usage] : b.1.28.1 |Immunoglobulin-like beta-sandwich |NEAT domain-like |NEAT domain |Iron-regulated surface determinant protein C, IsdC |Staphylococcus aureus [TaxId: 1280]
d1yx2a2 : (GLY299) (LYS356) [view usage] : b.44.2.1 |Elongation factor/aminomethyltransferase common domain |Aminomethyltransferase beta-barrel domain |Aminomethyltransferase beta-barrel domain |Glycine cleavage system T protein, GcvT |Bacillus subtilis [TaxId: 1423]
d3tb5a_ : (VAL197) (THR246) [view usage] : d.127.1.0 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |automated matches |automated matches |Enterococcus faecalis [TaxId: 565646]
d2vnra_ : (LYS140) (ALA205) [view usage] : b.18.1.33 |Galactose-binding domain-like |Galactose-binding domain-like |NPCBM-like |automated matches |Clostridium perfringens [TaxId: 1502]
d1h8eh_ : (ARG34) (PHE76) [view usage] : b.93.1.1 |Epsilon subunit of F1F0-ATP synthase N-terminal domain |Epsilon subunit of F1F0-ATP synthase N-terminal domain |Epsilon subunit of F1F0-ATP synthase N-terminal domain |Epsilon subunit of F1F0-ATP synthase N-terminal domain |Cow (Bos taurus) [TaxId: 9913]
d2a6wb_ : (VAL159) (ASP222) [view usage] : b.29.1.13 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Lectin leg-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2d6ma_ : (PHE98) (GLN149) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4l7db_ : (LEU327) (GLY378) [view usage] : b.68.11.1 |6-bladed beta-propeller |Kelch motif |Kelch motif |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1tc1b_ : (LEU140) (PRO187) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Hypoxanthine PRTase |Trypanosoma cruzi [TaxId: 5693]
d1f1sa4 : (PRO802) (PHE843) [view usage] : b.30.5.2 |Supersandwich |Galactose mutarotase-like |Hyaluronate lyase-like, central domain |Hyaluronate lyase |Streptococcus agalactiae [TaxId: 1311]
d1p5ua2 : (GLY180) (LYS231) [view usage] : b.7.2.1 |C2 domain-like |Periplasmic chaperone C-domain |Periplasmic chaperone C-domain |Caf1m |Yersinia pestis [TaxId: 632]
d4n7ia_ : (LYS429) (ALA483) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3zgda_ : (ILE328) (PRO384) [view usage] : b.68.11.1 |6-bladed beta-propeller |Kelch motif |Kelch motif |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wooa1 : (TYR296) (LYS352) [view usage] : b.44.2.1 |Elongation factor/aminomethyltransferase common domain |Aminomethyltransferase beta-barrel domain |Aminomethyltransferase beta-barrel domain |Glycine cleavage system T protein, GcvT |Thermotoga maritima [TaxId: 2336]
d3bb6d_ : (GLY48) (ALA101) [view usage] : b.82.2.13 |Double-stranded beta-helix |Clavaminate synthase-like |TehB-like |Uncharacterized protein YeaR |Escherichia coli [TaxId: 562]
d3a0da_ : (GLY52) (PRO100) [view usage] : b.78.1.0 |beta-Prism II |alpha-D-mannose-specific plant lectins |automated matches |automated matches |Polygonatum cyrtonema [TaxId: 195526]
d2vmga1 : (VAL114) (ASP173) [view usage] : b.18.1.33 |Galactose-binding domain-like |Galactose-binding domain-like |NPCBM-like |Uncharacterized Protein CPF2129 |Clostridium perfringens [TaxId: 1502]
d4aryb3 : (HIS540) (VAL608) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Bacillus thuringiensis [TaxId: 29339]
d2k1wa_ : (ALA3) (GLU50) [view usage] : b.11.1.0 |gamma-Crystallin-like |gamma-Crystallin-like |automated matches |automated matches |Methanosarcina acetivorans [TaxId: 2214]
d2ux6a_ : (LYS38) (VAL90) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |automated matches |Achromobacter cycloclastes [TaxId: 223]
d2yroa_ : (TYR98) (SER150) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4in4c_ : (ILE328) (SER383) [view usage] : b.68.11.1 |6-bladed beta-propeller |Kelch motif |Kelch motif |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wlda_ : (ASP84) (GLU135) [view usage] : b.29.1.3 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Galectin (animal S-lectin) |automated matches |Conger eel (Conger myriaster) [TaxId: 7943]
d2gndb_ : (GLY167) (LEU237) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |automated matches |Bloodwood tree (Pterocarpus angolensis) [TaxId: 182271]
d1wwwx_ : (SER312) (MET379) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |High affinity nerve growth factor receptor TrkA, different domains |Human (Homo sapiens) [TaxId: 9606]
d7ahla_ : (THR243) (ASN293) [view usage] : f.6.1.1 |Leukocidin-like |Leukocidin-like |Leukocidin (pore-forming toxin) |Alpha-hemolysin |Staphylococcus aureus [TaxId: 1280]
d2fgwh2 : (PRO160) (PRO224) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Human (Homo sapiens) [TaxId: 9606]
d1e57a_ : (LEU90) (SER175) [view usage] : b.121.4.6 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tymoviridae-like VP |Tymovirus coat protein |PHMV (Physalis mottle virus) [TaxId: 72539]
d4p7wa_ : (SER130) (GLU172) [view usage] : b.82.2.0 |Double-stranded beta-helix |Clavaminate synthase-like |automated matches |automated matches |Rhizobium loti [TaxId: 266835]
d1uypa1 : (ALA377) (TRP431) [view usage] : b.29.1.19 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 32 C-terminal domain |Beta-fructosidase (invertase), C-terminal domain |Thermotoga maritima [TaxId: 2336]
d2eakb_ : (PHE99) (GLN148) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wlca_ : (PHE86) (GLU135) [view usage] : b.29.1.3 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Galectin (animal S-lectin) |automated matches |Conger eel (Conger myriaster) [TaxId: 7943]
d2fbec_ : (ARG129) (VAL186) [view usage] : b.29.1.22 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |SPRY domain |Similar to Ret finger protein-like 1 |Human (Homo sapiens) [TaxId: 9606]
d2o6pb_ : (THR79) (GLY144) [view usage] : b.1.28.1 |Immunoglobulin-like beta-sandwich |NEAT domain-like |NEAT domain |Iron-regulated surface determinant protein C, IsdC |Staphylococcus aureus [TaxId: 1280]
d1qy3a_ : (TYR143) (ALA226) [view usage] : d.22.1.1 |GFP-like |GFP-like |Fluorescent proteins |Green fluorescent protein, GFP |Jellyfish (Aequorea victoria) [TaxId: 6100]
d2j2zb1 : (ASN115) (ASP171) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |PAP fimbrial minor pilin protein PapH |Escherichia coli [TaxId: 562]
d1jova_ : (VAL161) (ASN219) [view usage] : b.30.5.7 |Supersandwich |Galactose mutarotase-like |Hypothetical protein HI1317 |Hypothetical protein HI1317 |Haemophilus influenzae [TaxId: 727]
d2a6xb_ : (VAL159) (ASP222) [view usage] : b.29.1.13 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Lectin leg-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4gboa_ : (TYR148) (VAL222) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Thermobifida fusca [TaxId: 2021]
d2vmia_ : (VAL987) (ASP1046) [view usage] : b.18.1.33 |Galactose-binding domain-like |Galactose-binding domain-like |NPCBM-like |automated matches |Clostridium perfringens [TaxId: 1502]
d1yhha_ : (HIS148) (ALA226) [view usage] : d.22.1.1 |GFP-like |GFP-like |Fluorescent proteins |automated matches |Jellyfish (Aequorea victoria) [TaxId: 6100]
d1o75b2 : (ASP360) (LYS411) [view usage] : b.1.20.1 |Immunoglobulin-like beta-sandwich |Tp47 lipoprotein, middle and C-terminal domains |Tp47 lipoprotein, middle and C-terminal domains |Tp47 lipoprotein, middle and C-terminal domains |Treponema pallidum [TaxId: 160]
d3bb6c_ : (GLY48) (ALA101) [view usage] : b.82.2.13 |Double-stranded beta-helix |Clavaminate synthase-like |TehB-like |Uncharacterized protein YeaR |Escherichia coli [TaxId: 562]
d3uv9a_ : (ASP440) (PRO495) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Rhesus monkey (Macaca mulatta) [TaxId: 9544]
d3rnsa2 : (GLY179) (LYS223) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Leptotrichia buccalis [TaxId: 523794]
d1dfxa1 : (TRP78) (GLU124) [view usage] : b.1.13.1 |Immunoglobulin-like beta-sandwich |Superoxide reductase-like |Superoxide reductase-like |Desulfoferrodoxin C-terminal domain |Desulfovibrio desulfuricans [TaxId: 876]
d2xn4a_ : (LEU448) (GLY506) [view usage] : b.68.11.0 |6-bladed beta-propeller |Kelch motif |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.70, b.82, b.29, b.30, b.18, b.121, d.127, b.2, b.6, b.1, d.126, c.61, b.11, b.7, b.23, b.44, f.6, d.22, b.78,
b.93