Tableau information
Concept source: d1oq1c_ amino acid (a.a.) range (ARG159)(ASP211)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG159) (ASP165) E1
(GLY167) (ILE173) E2
(LEU179) (GLY185) E3
(GLY198) (MSE202) E4
(LYS206) (ASP211) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 172.0° E2
E3 -19.6° 168.1° E3
E4 126.2° -57.3° 120.2° E4
E5 -64.9° 110.0° -74.6° 163.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2wwob_ : (THR27) (ALA73) [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |automated matches |Yersinia pseudotuberculosis [TaxId: 633]
d1e3ha3 : (THR350) (TYR400) [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 |Streptomyces antibioticus [TaxId: 1890]
d1fjra_ : (ALA16) (LYS51) [view usage] : b.102.1.1 |Methuselah ectodomain |Methuselah ectodomain |Methuselah ectodomain |Methuselah ectodomain |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1wkra_ : (THR51) (LYS86) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]
d1ticb_ : (ILE53) (HIS109) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Triacylglycerol lipase |Rhizopus delemar [TaxId: 64495]
d1q25a3 : (ASN365) (THR424) [view usage] : b.64.1.1 |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Cation-independent mannose-6-phosphate receptor (MIR-receptor) |Cow (Bos taurus) [TaxId: 9913]
d2agca_ : (PHE3) (CYS68) [view usage] : b.95.1.1 |Ganglioside M2 (gm2) activator |Ganglioside M2 (gm2) activator |Ganglioside M2 (gm2) activator |Ganglioside M2 (gm2) activator |Mouse (Mus musculus) [TaxId: 10090]
d2zgua_ : (GLY98) (THR153) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Agrocybe aegerita [TaxId: 5400]
d3umna_ : (GLY493) (THR548) [view usage] : b.1.16.0 |Immunoglobulin-like beta-sandwich |Lamin A/C globular tail domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1kita1 : (HIS154) (ILE213) [view usage] : b.29.1.8 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Vibrio cholerae sialidase, N-terminal and insertion domains |Vibrio cholerae sialidase, N-terminal and insertion domains |Vibrio cholerae [TaxId: 666]
d1gfla_ : (HIS148) (ALA226) [view usage] : d.22.1.1 |GFP-like |GFP-like |Fluorescent proteins |Green fluorescent protein, GFP |Jellyfish (Aequorea victoria) [TaxId: 6100]
d2h0bc_ : (ASP369) (GLU447) [view usage] : b.29.1.4 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Laminin G-like module |Ligand-binding domain of neurexin 1beta |Cow (Bos taurus) [TaxId: 9913]
d1yc7a_ : (THR56) (GLY109) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Camel (Camelus dromedarius) [TaxId: 9838]
d4m4sa2 : (ARG260) (LYS287) [view usage] : b.43.3.1 |Reductase/isomerase/elongation factor common domain |Translation proteins |Elongation factors |Initiation factor eIF2 gamma subunit, domain II |Sulfolobus solfataricus [TaxId: 2287]
d1g13a_ : (PHE3) (CYS68) [view usage] : b.95.1.1 |Ganglioside M2 (gm2) activator |Ganglioside M2 (gm2) activator |Ganglioside M2 (gm2) activator |Ganglioside M2 (gm2) activator |Human (Homo sapiens) [TaxId: 9606]
d1fv2a1 : (PHE1033) (LYS1088) [view usage] : b.29.1.6 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Clostridium neurotoxins, the second last domain |Tetanus neurotoxin |Clostridium tetani [TaxId: 1513]
d1gsla_ : (THR173) (ILE229) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |West-central african legume (Griffonia simplicifolia) [TaxId: 3850]
d4i88a_ : (SER91) (LEU133) [view usage] : b.15.1.1 |HSP20-like chaperones |HSP20-like chaperones |HSP20 |Small heat shock protein |Methanococcus jannaschii [TaxId: 2190]
d1ifra_ : (GLY492) (VAL544) [view usage] : b.1.16.1 |Immunoglobulin-like beta-sandwich |Lamin A/C globular tail domain |Lamin A/C globular tail domain |Lamin A/C globular tail domain |Human (Homo sapiens) [TaxId: 9606]
d1p6gq_ : (ARG5) (ARG76) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |70S ribosome functional complex |Escherichia coli [TaxId: 562]
d2rcja1 : (TYR35) (SER85) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |T-cell antigen receptor |Human (Homo sapiens), beta-chain [TaxId: 9606]
d1pu5a_ : (HIS1) (CYS70) [view usage] : b.95.1.1 |Ganglioside M2 (gm2) activator |Ganglioside M2 (gm2) activator |Ganglioside M2 (gm2) activator |Ganglioside M2 (gm2) activator |Human (Homo sapiens) [TaxId: 9606]
d1gnza_ : (ILE170) (LEU239) [view usage] : b.29.1.1 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Legume lectins |Legume lectin |Griffonia simplicifolia, lectin I-b4 [TaxId: 3850]
d2ag9a_ : (PHE5) (CYS70) [view usage] : b.95.1.1 |Ganglioside M2 (gm2) activator |Ganglioside M2 (gm2) activator |Ganglioside M2 (gm2) activator |Ganglioside M2 (gm2) activator |Human (Homo sapiens) [TaxId: 9606]
d2a5za1 : (TYR185) (LYS254) [view usage] : b.29.1.24 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |SO2946-like |Hypothetical protein SO2946 |Shewanella oneidensis [TaxId: 70863]
d1fp7b_ : (LEU1485) (THR1556) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Formyltetrahydrofolate synthetase |Moorella thermoacetica [TaxId: 1525]
d2a5zc_ : (TYR185) (ALA260) [view usage] : b.29.1.24 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |SO2946-like |Hypothetical protein SO2946 |Shewanella oneidensis [TaxId: 70863]
d4okcb_ : (ASP40) (LYS99) [view usage] : b.78.1.0 |beta-Prism II |alpha-D-mannose-specific plant lectins |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d3jt0a_ : (GLY79) (VAL131) [view usage] : b.1.16.0 |Immunoglobulin-like beta-sandwich |Lamin A/C globular tail domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1e3pa4 : (THR350) (TYR400) [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 |Streptomyces antibioticus [TaxId: 1890]
d3ussa_ : (GLU130) (PRO179) [view usage] : b.82.1.19 |Double-stranded beta-helix |RmlC-like cupins |Cysteine dioxygenase type I |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1r17b2 : (THR440) (ASN514) [view usage] : b.2.3.4 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Fibrinogen-binding domain |Fibrinogen-binding adhesin SdrG |Staphylococcus epidermidis [TaxId: 1282]
d1vaha1 : (GLN416) (SER470) [view usage] : b.71.1.0 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |automated matches |automated matches |Pig (Sus scrofa) [TaxId: 9823]
d3umnb_ : (GLY493) (LYS547) [view usage] : b.1.16.0 |Immunoglobulin-like beta-sandwich |Lamin A/C globular tail domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3og2a2 : (PHE492) (THR542) [view usage] : b.71.1.0 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |automated matches |automated matches |Trichoderma reesei [TaxId: 51453]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.82, c.69, i.1, b.29, b.50, c.37, d.14, b.2, b.1, b.95, b.43, b.71, b.15, b.64, d.22, b.78, b.102