Tableau information
Concept source: d2fz2a_ amino acid (a.a.) range (PRO127)(SER181)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO127) (PRO133) E1
(ILE145) (ASP149) E2
(SER150) (GLN160) E3
(THR168) (SER174) E4
(GLY175) (SER181) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 115.9° E2
E3 147.6° -44.4° E3
E4 -35.6° 130.9° 173.1° E4
E5 44.5° 160.4° -151.1° 35.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2fz2a_ : (PRO127) (SER181) [view usage] : b.121.4.6 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tymoviridae-like VP |automated matches |Turnip yellow mosaic virus [TaxId: 12155]
d2k0ra_ : (GLY25) (GLU65) [view usage] : b.1.17.0 |Immunoglobulin-like beta-sandwich |Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) |automated matches |automated matches |Neisseria meningitidis [TaxId: 491]
d1qjzb_ : (LYS127) (LYS182) [view usage] : b.121.4.6 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tymoviridae-like VP |Tymovirus coat protein |PHMV (Physalis mottle virus) [TaxId: 72539]
d1auya_ : (LEU128) (SER181) [view usage] : b.121.4.6 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tymoviridae-like VP |Tymovirus coat protein |TYMV (Turnip yellow mosaic virus) [TaxId: 12154]
d2fz1b_ : (PRO127) (SER181) [view usage] : b.121.4.6 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tymoviridae-like VP |automated matches |Turnip yellow mosaic virus [TaxId: 12155]
d1ddla_ : (PRO127) (SER181) [view usage] : b.121.4.6 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tymoviridae-like VP |Tymovirus coat protein |DYMV (Desmodium yellow mottle tymovirus) [TaxId: 70821]
d2fz1a_ : (LEU128) (SER181) [view usage] : b.121.4.6 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tymoviridae-like VP |automated matches |Turnip yellow mosaic virus [TaxId: 12155]
d1ddlc_ : (PRO127) (SER181) [view usage] : b.121.4.6 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tymoviridae-like VP |Tymovirus coat protein |DYMV (Desmodium yellow mottle tymovirus) [TaxId: 70821]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.121, b.1