Tableau information
Concept source: d1z5lb_ amino acid (a.a.) range (LYS48)(TYR94)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS48) (SER52) E1
(SER61) (GLU69) E2
(GLU69) (GLU74) E3
(THR75) (HIS84) E4
(PRO90) (TYR94) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 149.9° E2
E3 -115.5° 73.1° E3
E4 -45.8° 152.8° -126.4° E4
E5 104.2° -51.6° -63.9° 149.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3o8xb_ : (ASP53) (TYR94) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Mouse (Mus musculus) [TaxId: 10090]
d3dhma_ : (SER52) (ASP96) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Human (Homo sapiens) [TaxId: 9606]
d1w6sc_ : (MET2422) (TRP2467) [view usage] : b.70.1.1 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase-like |Methanol dehydrogenase, heavy chain |Methylobacterium extorquens [TaxId: 408]
d2d36a_ : (TYR115) (LEU153) [view usage] : b.45.1.0 |Split barrel-like |FMN-binding split barrel |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 273063]
d2ajta1 : (GLU362) (ASN408) [view usage] : b.43.2.2 |Reductase/isomerase/elongation factor common domain |FucI/AraA C-terminal domain-like |AraA C-terminal domain-like |L-arabinose isomerase AraA |Escherichia coli [TaxId: 562]
d2lm3a_ : (ARG320) (VAL379) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Rhesus monkey (Macaca mulatta) [TaxId: 9544]
d2xdpa2 : (VAL943) (ALA977) [view usage] : b.34.9.0 |SH3-like barrel |Tudor/PWWP/MBT |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1umua_ : (TYR52) (ILE119) [view usage] : b.87.1.1 |LexA/Signal peptidase |LexA/Signal peptidase |LexA-related |UmuD' |Escherichia coli [TaxId: 562]
d2cmba_ : (LYS131) (TYR176) [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1qu0a_ : (GLY2937) (SER2977) [view usage] : b.29.1.4 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Laminin G-like module |Laminin alpha2 chain |Mouse (Mus musculus) [TaxId: 10090]
d1d3ei_ : (VAL89) (PRO134) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |HRV16 complexed with d1d2-ICAM-1 |Human rhinovirus 16 [TaxId: 31708]
d1okqa1 : (VAL2748) (THR2791) [view usage] : b.29.1.4 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Laminin G-like module |Laminin alpha2 chain |Mouse (Mus musculus) [TaxId: 10090]
d1zx8a1 : (PRO31) (TYR68) [view usage] : b.62.1.3 |Cyclophilin-like |Cyclophilin-like |TM1367-like |Hypothetical protein TM1367 |Thermotoga maritima [TaxId: 2336]
d2zjvb_ : (GLN101) (PRO154) [view usage] : b.96.1.1 |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |Nicotinic receptor ligand binding domain-like |automated matches |Great pond snail (Lymnaea stagnalis) [TaxId: 6523]
d1ipkb1 : (ILE51) (ASN87) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Seed storage 7S protein |Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]
d1maca_ : (LEU45) (ASN82) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |Bacillus 1-3,1-4-beta-glucanase |Bacillus macerans [TaxId: 44252]
d2wuha_ : (ALA71) (ALA115) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2a73b2 : (THR1421) (PRO1473) [view usage] : b.1.29.1 |Immunoglobulin-like beta-sandwich |Macroglobulin |Alpha-macroglobulin receptor domain |Complement C3 MG8 |Human (Homo sapiens) [TaxId: 9606]
d3dhja_ : (GLU50) (LYS94) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Human (Homo sapiens) [TaxId: 9606]
d1uuna_ : (VAL133) (ASN184) [view usage] : f.6.1.2 |Leukocidin-like |Leukocidin-like |Porin MspA |Porin MspA |Mycobacterium smegmatis [TaxId: 1772]
d1ea9c1 : (LEU59) (GLU96) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Maltogenic amylase, N-terminal domain N |Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
d3gbla_ : (LEU54) (VAL92) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Ctenopharyngodon idella [TaxId: 7959]
d3f3hb_ : (ARG57) (ILE106) [view usage] : b.1.21.1 |Immunoglobulin-like beta-sandwich |Fungal immunomodulatory protein, FIP |Fungal immunomodulatory protein, FIP |automated matches |Ganoderma lucidum [TaxId: 5315]
d1qu0c_ : (GLY2937) (SER2977) [view usage] : b.29.1.4 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Laminin G-like module |Laminin alpha2 chain |Mouse (Mus musculus) [TaxId: 10090]
d1pypa_ : (TYR2) (THR60) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Inorganic pyrophosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1exga_ : (ALA64) (VAL109) [view usage] : b.2.2.1 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family II |Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD |Cellulomonas fimi [TaxId: 1708]
d4f2da2 : (GLU362) (ASN408) [view usage] : b.43.2.0 |Reductase/isomerase/elongation factor common domain |FucI/AraA C-terminal domain-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4v19v_ : (TRP110) (LYS150) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d1ldsa_ : (SER52) (LYS94) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Human (Homo sapiens) [TaxId: 9606]
d2atqb1 : (LYS32) (THR76) [view usage] : b.40.4.7 |OB-fold |Nucleic acid-binding proteins |Phage ssDNA-binding proteins |Gene 32 protein (gp32) core |Enterobacteria phage RB69 [TaxId: 12353]
d1dyka2 : (GLY2937) (SER2977) [view usage] : b.29.1.4 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Laminin G-like module |Laminin alpha2 chain |Mouse (Mus musculus) [TaxId: 10090]
d1czva_ : (LYS111) (GLY155) [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |C2 domain of factor V |Human (Homo sapiens) [TaxId: 9606]
d1jeyb1 : (ARG242) (LEU306) [view usage] : b.131.1.2 |SPOC domain-like |SPOC domain-like |Ku80 subunit middle domain |Ku80 subunit middle domain |Human (Homo sapiens) [TaxId: 9606]
d3tlra_ : (ASP53) (LYS94) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Human (Homo sapiens) [TaxId: 9606]
d2qqja1 : (HIS381) (GLY426) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1umub_ : (TYR52) (ILE119) [view usage] : b.87.1.1 |LexA/Signal peptidase |LexA/Signal peptidase |LexA-related |UmuD' |Escherichia coli [TaxId: 562]
d2h0bd_ : (GLN378) (GLU447) [view usage] : b.29.1.4 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Laminin G-like module |Ligand-binding domain of neurexin 1beta |Cow (Bos taurus) [TaxId: 9913]
d1o6sa1 : (ALA420) (GLU455) [view usage] : b.1.18.15 |Immunoglobulin-like beta-sandwich |E set domains |Internalin Ig-like domain |Internalin A |Listeria monocytogenes [TaxId: 1639]
d1byha_ : (LYS46) (ASN84) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |Bacillus 1-3,1-4-beta-glucanase |synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins
d1s4cb_ : (GLY37) (LEU74) [view usage] : b.82.2.7 |Double-stranded beta-helix |Clavaminate synthase-like |YhcH-like |Hypothetical protein HI0227 |Haemophilus influenzae [TaxId: 727]
d1gw7b_ : (GLY2339) (THR2384) [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |p3 shell |Bacteriophage PRD1 [TaxId: 10658]
d1e50q_ : (THR121) (HIS163) [view usage] : b.2.5.6 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |RUNT domain |Acute myeloid leukemia 1 protein (AML1), RUNT domain |Human (Homo sapiens) [TaxId: 9606]
d2qqia2 : (PHE381) (GLY423) [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |C2 domain of factor VIII |Human (Homo sapiens) [TaxId: 9606]
d2fnja1 : (LEU77) (GLY120) [view usage] : b.29.1.22 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |SPRY domain |LD34464p |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, b.82, i.1, b.29, c.45, i.6, b.40, b.18, b.2, b.1, b.45, b.96, b.62, b.34, b.43, b.87, f.6, b.131