Tableau information
Concept source: d1qwda_ amino acid (a.a.) range (VAL60)(PHE109)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL60) (LEU66) E1
(ASN73) (TYR79) E2
(TRP86) (GLU90) E3
(GLY91) (PHE95) E4
(LEU104) (PHE109) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 165.4° E2
E3 -30.9° 163.1° E3
E4 -55.8° 134.2° -43.6° E4
E5 128.1° -46.9° 128.5° 162.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4gd9b_ : (TYR54) (GLY113) [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |automated matches |Streptomyces avidinii [TaxId: 1895]
d4kooa_ : (ALA79) (SER143) [view usage] : d.18.1.2 |ssDNA-binding transcriptional regulator domain |ssDNA-binding transcriptional regulator domain |Plant transcriptional regulator PBF-2 |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2wqla_ : (LYS40) (SER83) [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |automated matches |Carrot (Daucus carota) [TaxId: 4039]
d3om5a_ : (ASP95) (GLY149) [view usage] : b.67.2.2 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Levansucrase |Levansucrase |Bacillus megaterium [TaxId: 1404]
d2gtlm1 : (THR133) (PRO182) [view usage] : b.61.7.1 |Streptavidin-like |Extracellular hemoglobin linker subunit, receptor domain |Extracellular hemoglobin linker subunit, receptor domain |Hemoglobin linker chain l1 |Common earthworm (Lumbricus terrestris) [TaxId: 6398]
d2a75a2 : (GLY181) (PHE220) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |automated matches |Trypanosoma rangeli [TaxId: 5698]
d1a67a_ : (SER49) (GLU112) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Cystatin |Chicken (Gallus gallus) [TaxId: 9031]
d3om7a_ : (ASP95) (GLY149) [view usage] : b.67.2.2 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Levansucrase |Levansucrase |Bacillus megaterium [TaxId: 1404]
d3rfzc1 : (PHE55) (ALA118) [view usage] : b.1.11.1 |Immunoglobulin-like beta-sandwich |PapD-like |Pilus chaperone |automated matches |Escherichia coli [TaxId: 562]
d3om4a_ : (ASP95) (GLY149) [view usage] : b.67.2.2 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Levansucrase |Levansucrase |Bacillus megaterium [TaxId: 1404]
d2omza1 : (GLY450) (GLY496) [view usage] : b.1.18.15 |Immunoglobulin-like beta-sandwich |E set domains |Internalin Ig-like domain |Internalin A |Listeria monocytogenes [TaxId: 1639]
d4koob_ : (ALA79) (SER143) [view usage] : d.18.1.2 |ssDNA-binding transcriptional regulator domain |ssDNA-binding transcriptional regulator domain |Plant transcriptional regulator PBF-2 |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1e8tb_ : (VAL469) (SER518) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Paramyxovirus hemagglutinin-neuraminidase head domain |Newcastle disease virus [TaxId: 11176]
d2z77c_ : (GLU78) (TRP128) [view usage] : d.17.4.3 |Cystatin-like |NTF2-like |Ketosteroid isomerase-like |Hypothetical protein Rv0760c |Mycobacterium tuberculosis H37Rv [TaxId: 83332]
d3byka_ : (SER166) (GLY210) [view usage] : b.67.2.2 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Levansucrase |Levansucrase |Bacillus subtilis [TaxId: 1423]
d2lhaa_ : (LEU273) (THR329) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Synaptogamin I |Human (Homo sapiens) [TaxId: 9606]
d4ra0c2 : (ASP140) (ALA203) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1l2ma_ : (LEU42) (SER96) [view usage] : d.89.1.4 |Origin of replication-binding domain, RBD-like |Origin of replication-binding domain, RBD-like |DNA-binding domain of REP protein |DNA-binding domain of REP protein |Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]
d1n1sa2 : (GLY184) (PHE223) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Trypanosoma sialidase |Trypanosoma rangeli [TaxId: 5698]
d1n12a_ : (VAL1) (ASN88) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |PapE pilus subunit |Escherichia coli [TaxId: 562]
d4kooc_ : (ALA79) (SER143) [view usage] : d.18.1.2 |ssDNA-binding transcriptional regulator domain |ssDNA-binding transcriptional regulator domain |Plant transcriptional regulator PBF-2 |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d3fvtf_ : (GLN37) (VAL117) [view usage] : c.69.1.25 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetyl xylan esterase-like |automated matches |Bacillus pumilus [TaxId: 1408]
d1bp1a2 : (PRO324) (ARG383) [view usage] : d.83.1.1 |Aha1/BPI domain-like |Bactericidal permeability-increasing protein, BPI |Bactericidal permeability-increasing protein, BPI |Bactericidal permeability-increasing protein, BPI |Human (Homo sapiens) [TaxId: 9606]
d1gd4a_ : (VAL41) (LYS89) [view usage] : d.17.1.2 |Cystatin-like |Cystatin/monellin |Cystatins |Cystatin A (stefin A) |Human (Homo sapiens) [TaxId: 9606]
d2mf6a_ : (SER47) (SER101) [view usage] : b.61.1.1 |Streptavidin-like |Avidin/streptavidin |Avidin/streptavidin |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1a34a_ : (PHE109) (VAL153) [view usage] : b.121.7.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Satellite viruses |Satellite viruses |STNV coat protein |Satellite tobacco necrosis virus [TaxId: 12881]
d2qmsa_ : (LEU454) (SER494) [view usage] : d.93.1.1 |SH2-like |SH2 domain |SH2 domain |Growth factor receptor-bound protein 7 |Human (Homo sapiens) [TaxId: 9606]
d1e8ta_ : (VAL469) (SER518) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Paramyxovirus hemagglutinin-neuraminidase head domain |Newcastle disease virus [TaxId: 11176]
d3om6a_ : (ASP95) (GLY149) [view usage] : b.67.2.2 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Levansucrase |Levansucrase |Bacillus megaterium [TaxId: 1404]
d3anza_ : (GLY223) (ASN293) [view usage] : f.6.1.1 |Leukocidin-like |Leukocidin-like |Leukocidin (pore-forming toxin) |automated matches |Staphylococcus aureus [TaxId: 158878]
d1odtc_ : (LYS37) (VAL117) [view usage] : c.69.1.25 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetyl xylan esterase-like |Cephalosporin C deacetylase |Bacillus subtilis [TaxId: 1423]
d3qi0f_ : (SER262) (LEU309) [view usage] : b.69.5.2 |7-bladed beta-propeller |RCC1/BLIP-II |beta-lactamase inhibitor protein-II, BLIP-II |automated matches |Streptomyces exfoliatus [TaxId: 1905]
d1p35b_ : (LEU217) (LYS263) [view usage] : b.28.1.1 |Baculovirus p35 protein |Baculovirus p35 protein |Baculovirus p35 protein |Baculovirus p35 protein |AcMNPV (Autographa californica nuclear polyhedrosis virus) [TaxId: 46015]
d1mz5a2 : (GLY181) (PHE220) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Trypanosoma sialidase |Trypanosoma rangeli [TaxId: 5698]
d3byja_ : (SER166) (GLY210) [view usage] : b.67.2.2 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Levansucrase |Levansucrase |Bacillus subtilis [TaxId: 1423]
d3anzc_ : (GLY223) (ASN293) [view usage] : f.6.1.1 |Leukocidin-like |Leukocidin-like |Leukocidin (pore-forming toxin) |automated matches |Staphylococcus aureus [TaxId: 158878]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, c.69, b.69, b.67, d.129, b.60, b.121, b.2, b.1, d.17, b.61, b.7, d.93, d.89, f.6, d.83, d.18, b.28