Tableau information
Concept source: d1yedb1 amino acid (a.a.) range (THR68)(SER112)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR68) (SER74) E1
(THR77) (SER82) E2
(ALA88) (ARG94) E3
(MET100) (GLY104) E4
(GLY106) (SER112) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 155.7° E2
E3 -46.4° 149.0° E3
E4 103.1° -54.1° 144.6° E4
E5 133.9° -21.8° 151.0° 35.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3cspa_ : (ARG68) (ASP117) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Myelin oligodendrocyte glycoprotein (MOG) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1zhta1 : (THR134) (LYS190) [view usage] : d.338.1.1 |Oxysterol-binding protein-like |Oxysterol-binding protein-like |Oxysterol-binding protein |Oxysterol-binding protein homolog 4, KES1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3umta2 : (SER200) (ILE243) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1kn2h1 : (THR68) (SER112) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
d1ui7a1 : (SER229) (GLY265) [view usage] : b.30.2.1 |Supersandwich |Amine oxidase catalytic domain |Amine oxidase catalytic domain |Copper amine oxidase, domain 3 |Arthrobacter globiformis [TaxId: 1665]
d1fl5a1 : (ARG61) (ILE106) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
d1k12a_ : (CYS108) (PRO155) [view usage] : b.18.1.15 |Galactose-binding domain-like |Galactose-binding domain-like |Fucose binding lectin |Fucose binding lectin |European eel (Anguilla anguilla) [TaxId: 7936]
d1xq4a_ : (GLN76) (MSE126) [view usage] : b.1.23.1 |Immunoglobulin-like beta-sandwich |ApaG-like |ApaG-like |ApaG |Bordetella pertussis [TaxId: 520]
d3om2a_ : (SER175) (GLY230) [view usage] : b.67.2.2 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Levansucrase |Levansucrase |Bacillus megaterium [TaxId: 1404]
d3vi3a2 : (ALA527) (LEU601) [view usage] : b.1.15.0 |Immunoglobulin-like beta-sandwich |Integrin domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ek3a_ : (ARG61) (ILE106) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Human (Homo sapiens), cluster 2 [TaxId: 9606]
d3s48a_ : (ALA135) (PRO177) [view usage] : b.1.28.1 |Immunoglobulin-like beta-sandwich |NEAT domain-like |NEAT domain |automated matches |Staphylococcus aureus [TaxId: 282459]
d1avka1 : (SER229) (GLY265) [view usage] : b.30.2.1 |Supersandwich |Amine oxidase catalytic domain |Amine oxidase catalytic domain |Copper amine oxidase, domain 3 |Arthrobacter globiformis [TaxId: 1665]
d3ol2a3 : (LYS600) (VAL648) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Semaphorin 4d Ig-like domain |Human (Homo sapiens) [TaxId: 9606]
d1f00i1 : (SER708) (THR752) [view usage] : b.1.14.1 |Immunoglobulin-like beta-sandwich |Invasin/intimin cell-adhesion fragments |Invasin/intimin cell-adhesion fragments |Intimin |Escherichia coli [TaxId: 562]
d4ocsl1 : (PHE62) (VAL106) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1zhwa_ : (THR134) (LYS190) [view usage] : d.338.1.1 |Oxysterol-binding protein-like |Oxysterol-binding protein-like |Oxysterol-binding protein |Oxysterol-binding protein homolog 4, KES1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1yedb1 : (THR68) (SER112) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
d2m2da_ : (ARG96) (GLU150) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Programmed cell death protein 1, PD1, extracellular domain |Human (Homo sapiens) [TaxId: 9606]
d1jv2a1 : (PRO519) (LEU593) [view usage] : b.1.15.1 |Immunoglobulin-like beta-sandwich |Integrin domains |Integrin domains |Thigh, calf-1 and calf-2 domains of integrin alpha |Human (Homo sapiens) [TaxId: 9606]
d1we5a2 : (GLY138) (ASN203) [view usage] : b.30.5.11 |Supersandwich |Galactose mutarotase-like |YicI N-terminal domain-like |Putative glucosidase YicI, N-terminal domain |Escherichia coli [TaxId: 562]
d1x9la_ : (GLY32) (ALA96) [view usage] : b.2.10.1 |Common fold of diphtheria toxin/transcription factors/cytochrome f |DR1885-like metal-binding protein |DR1885-like metal-binding protein |Hypothetical protein DR1885 |Deinococcus radiodurans [TaxId: 1299]
d1m06f_ : (GLU11) (PRO73) [view usage] : b.121.5.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Microviridae-like VP |Microvirus capsid proteins |Bacteriophage alpha3 [TaxId: 10849]
d4ocrl1 : (PHE62) (VAL106) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1py9a_ : (ARG68) (ASP117) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Myelin oligodendrocyte glycoprotein (MOG) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2q87c_ : (ARG5) (SER63) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2q87b_ : (ARG5) (SER63) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2btvc2 : (VAL215) (MET253) [view usage] : b.19.1.1 |Viral protein domain |Viral protein domain |Top domain of virus capsid protein |BTV vp7, central (top) domain |Bluetongue virus [TaxId: 40051]
d1gh7a2 : (ALA162) (ASP212) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors |Human (Homo sapiens) [TaxId: 9606]
d3nn8b_ : (ARG66) (LEU111) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.19, b.67, b.30, b.18, b.121, b.2, b.1, d.338