Tableau information
Concept source: d2yzha_ amino acid (a.a.) range (ARG3)(GLY41)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG3) (LYS8) E1
(ASN10) (GLY16) E2
(GLY16) (VAL21) E3
(ARG24) (LYS33) E4
(GLN36) (GLY41) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 153.0° E2
E3 102.1° 79.3° E3
E4 -46.7° 106.7° -107.9° E4
E5 114.6° -91.0° 67.3° 160.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ryaa_ : (TRP86) (TRP129) [view usage] : d.113.1.5 |Nudix |Nudix |GDP-mannose mannosyl hydrolase NudD |GDP-mannose mannosyl hydrolase NudD |Escherichia coli [TaxId: 562]
d1q98a_ : (THR2) (LEU38) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thiol peroxidase Tpx |Haemophilus influenzae [TaxId: 727]
d3hvsa_ : (SER2) (LEU40) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thiol peroxidase Tpx |Escherichia coli K-12 [TaxId: 83333]
d4o1ra_ : (GLY27) (ARG68) [view usage] : b.86.1.2 |Hedgehog/intein (Hint) domain |Hedgehog/intein (Hint) domain |Intein (protein splicing domain) |automated matches |Nostoc punctiforme [TaxId: 63737]
d2j92a1 : (THR113) (GLY150) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |3C cysteine protease (picornain 3C) |Foot-and-mouth disease virus [TaxId: 12110]
d4dhlc1 : (SER75) (PRO120) [view usage] : b.1.12.0 |Immunoglobulin-like beta-sandwich |Purple acid phosphatase, N-terminal domain |automated matches |automated matches |French bean (Phaseolus vulgaris) [TaxId: 3885]
d4nrjc_ : (PRO13) (LYS52) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza b virus
d2xpea_ : (THR4) (LEU40) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Yersinia pseudotuberculosis [TaxId: 502800]
d2wv4a_ : (THR113) (GLY150) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |automated matches |Foot-and-mouth disease virus [TaxId: 12112]
d2yzha_ : (ARG3) (GLY41) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 224324]
d1qa7b_ : (ARG115) (ASP158) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |3C cysteine protease (picornain 3C) |Human hepatitis A virus [TaxId: 208726]
d3r4sa2 : (THR1187) (LYS1233) [view usage] : b.42.4.0 |beta-Trefoil |STI-like |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
d1kbpa1 : (SER75) (PRO120) [view usage] : b.1.12.1 |Immunoglobulin-like beta-sandwich |Purple acid phosphatase, N-terminal domain |Purple acid phosphatase, N-terminal domain |Purple acid phosphatase, N-terminal domain |French bean (Phaseolus vulgaris) [TaxId: 3885]
d3zrda_ : (THR2) (LEU40) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Yersinia pseudotuberculosis [TaxId: 502800]
d3j3af_ : (TYR105) (LYS152) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Homo sapiens [TaxId: 9606]
d4m44a_ : (PRO13) (LYS52) [view usage] : b.19.1.2 |Viral protein domain |Viral protein domain |Influenza hemagglutinin headpiece |Hemagglutinin |Influenza b virus [TaxId: 416659]
d1qxha_ : (SER2) (LEU40) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thiol peroxidase Tpx |Escherichia coli [TaxId: 562]
d2hrva_ : (ALA57) (ASN93) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |2A cysteine proteinase |Human rhinovirus 2 [TaxId: 12130]
d1xzwa1 : (VAL74) (VAL116) [view usage] : b.1.12.1 |Immunoglobulin-like beta-sandwich |Purple acid phosphatase, N-terminal domain |Purple acid phosphatase, N-terminal domain |Purple acid phosphatase, N-terminal domain |Sweet potato (Ipomoea batatas) [TaxId: 4120]
d2wv5a_ : (PRO114) (PRO149) [view usage] : b.47.1.4 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral cysteine protease of trypsin fold |automated matches |Foot-and-mouth disease virus [TaxId: 12112]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.19, i.1, b.47, c.47, b.1, b.42, d.113, b.86