Tableau information
Concept source: d4k1ja_ amino acid (a.a.) range (GLN273)(ASN306)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN273) (GLU277) E1
(GLU277) (PRO282) E2
(GLY286) (ILE290) E3
(CYS291) (TRP295) E4
(PRO301) (ASN306) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -82.4° E2
E3 91.6° 148.2° E3
E4 126.9° -150.7° -46.9° E4
E5 -83.5° -37.6° 171.9° 132.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1h8ua_ : (GLY50) (ARG104) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |Eosinophil major basic protein |Human (Homo sapiens) [TaxId: 9606]
d2rcfd_ : (ILE3) (VAL39) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |Carboxysome shell protein |Thiobacillus neapolitanus [TaxId: 927]
d1sy0a_ : (GLN65) (VAL109) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Nitrophorin 4 |Rhodnius prolixus [TaxId: 13249]
d1ap0a_ : (GLU19) (PRO54) [view usage] : b.34.13.2 |SH3-like barrel |Chromo domain-like |Chromo domain |Heterochromatin protein 1, HP1 |Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]
d1qcxa_ : (GLY152) (GLY182) [view usage] : b.80.1.2 |Single-stranded right-handed beta-helix |Pectin lyase-like |Pectin lyase |Pectin lyase |Aspergillus niger, type B [TaxId: 5061]
d2ls8a_ : (LEU58) (VAL116) [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1bj1v_ : (GLU44) (CYS104) [view usage] : g.17.1.1 |Cystine-knot cytokines |Cystine-knot cytokines |Platelet-derived growth factor-like |Vascular endothelial growth factor, VEGF |Human (Homo sapiens) [TaxId: 9606]
d2gina_ : (GLN17) (GLU75) [view usage] : b.159.1.1 |AOC barrel-like |Allene oxide cyclase-like |Allene oxide cyclase-like |Allene oxide cyclase, AOC |Thale cress (Arabidopsis thaliana), chloroplast AOC2 [TaxId: 3702]
d1ji6a2 : (GLY397) (TYR441) [view usage] : b.77.2.1 |beta-Prism I |delta-Endotoxin (insectocide), middle domain |delta-Endotoxin (insectocide), middle domain |delta-Endotoxin (insectocide), middle domain |Bacillus thuringiensis, CRY3bb1 [TaxId: 1428]
d1vqca_ : (MET1) (GLU51) [view usage] : b.40.4.7 |OB-fold |Nucleic acid-binding proteins |Phage ssDNA-binding proteins |Gene V protein |Enterobacteria phage M13, including coliphage f1 [TaxId: 10870]
d1umza_ : (GLY69) (GLY108) [view usage] : b.29.1.2 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Glycosyl hydrolases family 16 |Xyloglucan endotransglycosylase |European aspen (Populus tremula) [TaxId: 113636]
d1dlca2 : (GLY396) (TYR439) [view usage] : b.77.2.1 |beta-Prism I |delta-Endotoxin (insectocide), middle domain |delta-Endotoxin (insectocide), middle domain |delta-Endotoxin (insectocide), middle domain |Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]
d3bx4c_ : (ASP68) (TYR121) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |automated matches |Agkistrodon rhodostoma [TaxId: 8717]
d3wu2o_ : (VAL187) (SER242) [view usage] : f.4.1.4 |Transmembrane beta-barrels |OMPA-like |PsbO-like |Manganese-stabilising protein, PsbO |Thermosynechococcus vulcanus [TaxId: 32053]
d4dglc_ : (TYR39) (LYS71) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Protein kinase CK2, alpha subunit |Human (Homo sapiens) [TaxId: 9606]
d3rhkb_ : (SER1075) (SER1111) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Hepatocyte growth factor receptor, c-MET |Human (Homo sapiens) [TaxId: 9606]
d1poqa_ : (ASP58) (TYR86) [view usage] : b.135.1.1 |Superantigen (mitogen) Ypm |Superantigen (mitogen) Ypm |Superantigen (mitogen) Ypm |Superantigen (mitogen) Ypm |Yersinia pseudotuberculosis [TaxId: 633]
d2a2aa_ : (TYR13) (SER49) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1mkga_ : (TYR45) (LEU97) [view usage] : g.17.1.1 |Cystine-knot cytokines |Cystine-knot cytokines |Platelet-derived growth factor-like |Vascular endothelial growth factor, VEGF |Human (Homo sapiens) [TaxId: 9606]
d2vrpa_ : (ASP68) (TYR121) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |automated matches |Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
d2ckea_ : (PHE12) (LYS45) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3o69b_ : (GLN3) (ARG44) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |ADP-ribose pyrophosphatase homologue YffH |Escherichia coli [TaxId: 562]
d1h8ub_ : (GLY50) (ARG104) [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |Eosinophil major basic protein |Human (Homo sapiens) [TaxId: 9606]
d1t0bg_ : (GLU153) (ARG196) [view usage] : c.23.16.6 |Flavodoxin-like |Class I glutamine amidotransferase-like |ThuA-like |GK2113 homologue |Bacillus stearothermophilus [TaxId: 1422]
d1e42a1 : (GLY734) (ASN810) [view usage] : b.1.10.1 |Immunoglobulin-like beta-sandwich |Clathrin adaptor appendage domain |Alpha-adaptin ear subdomain-like |Beta2-adaptin AP2 ear domain, N-terminal subdomain |Human (Homo sapiens) [TaxId: 9606]
d1pfsa_ : (GLN4) (GLN41) [view usage] : b.40.4.7 |OB-fold |Nucleic acid-binding proteins |Phage ssDNA-binding proteins |Gene V protein |Pseudomonas phage Pf3 [TaxId: 10872]
d1np1a_ : (ASP66) (VAL109) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Nitrophorin 1 |Rhodnius prolixus [TaxId: 13249]
d1qtys_ : (TYR45) (ASN100) [view usage] : g.17.1.1 |Cystine-knot cytokines |Cystine-knot cytokines |Platelet-derived growth factor-like |Vascular endothelial growth factor, VEGF |Human (Homo sapiens) [TaxId: 9606]
d1u17b_ : (ASP67) (VAL110) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Nitrophorin 1 |Rhodnius prolixus [TaxId: 13249]
d2rcfb_ : (ILE3) (VAL39) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |Carboxysome shell protein |Thiobacillus neapolitanus [TaxId: 927]
d4j98a_ : (LEU481) (MET518) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Fibroblast growth factor receptor 2 |Human (Homo sapiens) [TaxId: 9606]
d2f8vc1 : (ALA5) (ASP42) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4h6ba_ : (HIS10) (SER77) [view usage] : b.159.1.1 |AOC barrel-like |Allene oxide cyclase-like |Allene oxide cyclase-like |automated matches |Physcomitrella patens [TaxId: 3218]
d2z9hb_ : (LEU3) (VAL42) [view usage] : b.40.15.1 |OB-fold |EutN/CcmL-like |EutN/CcmL-like |Ethanolamine utilization protein EutN |Escherichia coli [TaxId: 562]
d3lcsa_ : (ILE1116) (PRO1153) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1u17a1 : (ASP67) (THR109) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Nitrophorin 1 |Rhodnius prolixus [TaxId: 13249]
d1yhaa_ : (ILE2) (GLU51) [view usage] : b.40.4.7 |OB-fold |Nucleic acid-binding proteins |Phage ssDNA-binding proteins |Gene V protein |Enterobacteria phage M13, including coliphage f1 [TaxId: 10870]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.80, b.29, c.23, f.4, d.144, b.40, b.60, d.169, b.1, b.77, b.34, d.113, g.17, b.135, b.159