Tableau information
Concept source: d2q3nb1 amino acid (a.a.) range (VAL146)(PRO188)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL146) (PHE152) E1
(CYS156) (GLY161) E2
(ASN162) (LEU166) E3
(GLN176) (PRO182) E4
(GLY184) (PRO188) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 117.3° E2
E3 -53.0° 161.3° E3
E4 116.6° 86.3° -112.3° E4
E5 -89.1° -71.2° 91.7° 151.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1rmla_ : (PRO25) (SER72) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |Acidic FGF (FGF1) |Human (Homo sapiens) [TaxId: 9606]
d1vcla2 : (GLY156) (ASN201) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Hemolytic lectin CEL-III, domains 1 and 2 |Cucumaria echinata [TaxId: 40245]
d4f83a2 : (ASP1158) (SER1226) [view usage] : b.42.4.0 |beta-Trefoil |STI-like |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
d3tqya_ : (ILE80) (ASP113) [view usage] : b.40.4.0 |OB-fold |Nucleic acid-binding proteins |automated matches |automated matches |Coxiella burnetii [TaxId: 777]
d3aj6b1 : (VAL14) (VAL63) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |automated matches |Clostridium botulinum [TaxId: 1491]
d3n7ka2 : (ILE1167) (LYS1233) [view usage] : b.42.4.0 |beta-Trefoil |STI-like |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
d2vu9a2 : (ASP1108) (ASN1176) [view usage] : b.42.4.2 |beta-Trefoil |STI-like |Clostridium neurotoxins, C-terminal domain |automated matches |Clostridium botulinum [TaxId: 36826]
d2mc2a_ : (HIS117) (SER185) [view usage] : b.42.6.2 |beta-Trefoil |MIR domain |Ryanodine receptor N-terminal-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1ybia1 : (ILE15) (SER63) [view usage] : b.42.2.0 |beta-Trefoil |Ricin B-like lectins |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
d3p53a1 : (GLN11) (SER64) [view usage] : b.42.5.0 |beta-Trefoil |Actin-crosslinking proteins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4dckc_ : (VAL58) (SER104) [view usage] : b.42.1.0 |beta-Trefoil |Cytokine |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1z0ha2 : (TYR1165) (PHE1224) [view usage] : b.42.4.2 |beta-Trefoil |STI-like |Clostridium neurotoxins, C-terminal domain |Botulinum neurotoxin |Clostridium botulinum, serotype A [TaxId: 1491]
d1dfca4 : (ALA1422) (VAL1465) [view usage] : b.42.5.1 |beta-Trefoil |Actin-crosslinking proteins |Fascin |Fascin |Human (Homo sapiens) [TaxId: 9606]
d1knla_ : (ASP4) (TYR54) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Xylan binding domain, CBM13 (Endo-1,4-beta-xylanase C-terminal domain) |Streptomyces lividans [TaxId: 1916]
d2q3nb1 : (VAL146) (PRO188) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Agglutinin-1 chain B |Abrus precatorius [TaxId: 3816]
d1upsa2 : (TYR335) (ASN383) [view usage] : b.42.2.3 |beta-Trefoil |Ricin B-like lectins |GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain |GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain |Clostridium perfringens [TaxId: 1502]
d1riqa2 : (ASN159) (PRO210) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Alanyl-tRNA synthetase (AlaRS) |Aquifex aeolicus [TaxId: 63363]
d4qfia_ : (ASN67) (PHE118) [view usage] : d.5.1.1 |RNase A-like |RNase A-like |Ribonuclease A-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3mala_ : (THR104) (HIS167) [view usage] : b.42.6.0 |beta-Trefoil |MIR domain |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4p0ja_ : (CYS8) (VAL61) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ah4b1 : (VAL14) (VAL63) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Hemagglutinin component Ha1 |Clostridium botulinum [TaxId: 1491]
d4hr6c1 : (GLU6) (LEU57) [view usage] : b.42.2.0 |beta-Trefoil |Ricin B-like lectins |automated matches |automated matches |Trichosanthes anguina [TaxId: 50544]
d1hwmb1 : (ALA9) (SER59) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Plant cytotoxin B-chain (lectin) |Sambucus ebulus, ebulin [TaxId: 28503]
d1ggpb1 : (ALA12) (ASN65) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Plant cytotoxin B-chain (lectin) |Mongolian snake-gourd (Trichosanthes kirilowii), Lectin 1 [TaxId: 3677]
d2aaib2 : (THR137) (PRO183) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Plant cytotoxin B-chain (lectin) |Castor bean (Ricinus communis), Ricin [TaxId: 3988]
d1ce7b1 : (SER2) (SER56) [view usage] : b.42.2.1 |beta-Trefoil |Ricin B-like lectins |Ricin B-like |Plant cytotoxin B-chain (lectin) |European mistletoe (Viscum album) [TaxId: 3972]
d2rq9a_ : (LYS4) (SER53) [view usage] : b.42.1.1 |beta-Trefoil |Cytokine |Fibroblast growth factors (FGF) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4hr6c2 : (GLN136) (VAL183) [view usage] : b.42.2.0 |beta-Trefoil |Ricin B-like lectins |automated matches |automated matches |Trichosanthes anguina [TaxId: 50544]
d1irpa_ : (MET11) (GLY63) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |Interleukin-1 receptor antagonist protein |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.40, d.104, b.42, d.5