Tableau information
Concept source: d2q63a_ amino acid (a.a.) range (ARG8)(GLN61)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG8) (THR12) E1
(LYS20) (THR26) E2
(ASN30) (GLU34) E3
(GLY40) (ILE50) E4
(GLY52) (GLN61) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 131.3° E2
E3 -73.5° 154.7° E3
E4 -169.6° 54.1° -102.2° E4
E5 31.7° -104.7° 100.4° 145.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3pj6a_ : (ARG8) (GLN61) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d1qo0b_ : (GLY325) (TRP355) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Amide receptor/negative regulator of the amidase operon (AmiC) |Pseudomonas aeruginosa [TaxId: 287]
d3oq7a_ : (ARG8) (GLN61) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d2rf8b_ : (MET1) (THR50) [view usage] : d.153.1.0 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |automated matches |automated matches |Clostridium perfringens [TaxId: 1502]
d1ggoa2 : (GLU473) (ILE505) [view usage] : c.8.1.1 |The "swivelling" beta/beta/alpha domain |Phosphohistidine domain |Pyruvate phosphate dikinase, central domain |Pyruvate phosphate dikinase, central domain |Clostridium symbiosum [TaxId: 1512]
d2cbta_ : (ALA1002) (SER1047) [view usage] : b.1.7.1 |Immunoglobulin-like beta-sandwich |Actinoxanthin-like |Actinoxanthin-like |automated matches |Streptomyces carzinostaticus [TaxId: 1897]
d2rf8a_ : (ALA2) (TYR52) [view usage] : d.153.1.0 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |automated matches |automated matches |Clostridium perfringens [TaxId: 1502]
d2gs5a1 : (ALA53) (GLY119) [view usage] : d.310.1.1 |VC0467-like |VC0467-like |VC0467-like |Hypothetical protein DIP2367 |Corynebacterium diphtheriae [TaxId: 1717]
d3tava_ : (THR225) (THR262) [view usage] : d.127.1.0 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d2fdda_ : (ARG8) (GLN61) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |automated matches |Human immunodeficiency virus 1 [TaxId: 11676]
d2rg2a_ : (THR3) (TYR52) [view usage] : d.153.1.0 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |automated matches |automated matches |Clostridium perfringens [TaxId: 1502]
d2b60a_ : (ARG8) (GLN61) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |automated matches |Human immunodeficiency virus 1 [TaxId: 11676]
d1rl8a_ : (ARG8) (ASP60) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d2awga_ : (GLU91) (PHE145) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2r3ta_ : (ARG8) (GLN61) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d1dika2 : (GLU473) (ILE505) [view usage] : c.8.1.1 |The "swivelling" beta/beta/alpha domain |Phosphohistidine domain |Pyruvate phosphate dikinase, central domain |Pyruvate phosphate dikinase, central domain |Clostridium symbiosum [TaxId: 1512]
d2bjfa_ : (CYS2) (TYR52) [view usage] : d.153.1.0 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |automated matches |automated matches |Clostridium perfringens [TaxId: 1502]
d1sgua_ : (PRO9) (GLN61) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d1sg5a1 : (ASP44) (VAL83) [view usage] : b.137.1.2 |Rof/RNase P subunit-like |Rof/RNase P subunit-like |Rof-like |Inhibitor of Rho Rof |Escherichia coli [TaxId: 562]
d1ivpa_ : (ARG8) (ASN61) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 2 (HIV-2) protease |Human immunodeficiency virus type 2 [TaxId: 11709]
d3mx6a_ : (ASP210) (THR247) [view usage] : d.127.1.0 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |automated matches |automated matches |Rickettsia prowazekii [TaxId: 782]
d3upjb_ : (ARG8) (ASN61) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 2 (HIV-2) protease |Human immunodeficiency virus type 2 [TaxId: 11709]
d3c8ob_ : (VAL129) (MET160) [view usage] : c.8.7.0 |The "swivelling" beta/beta/alpha domain |RraA-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1qs8a_ : (GLY172) (SER215) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Plasmepsin (a hemoglobin-degrading enzyme) |Plasmodium vivax [TaxId: 5855]
d2q63a_ : (ARG8) (GLN61) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d4fo8a_ : (PRO211) (THR248) [view usage] : d.127.1.1 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Creatinase/aminopeptidase |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1y14d1 : (SER129) (LYS164) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2qfba_ : (VAL843) (SER906) [view usage] : b.88.2.1 |Mss4-like |RIG-I C-terminal-like |RIG-I C-terminal domain-like |RIG-I C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3ey6a_ : (MET33) (PHE88) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2sama_ : (ARG8) (ASN61) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Simian immunodeficiency virus (SIV) protease |Simian immunodeficiency virus, different strains [TaxId: 11723]
d2iwma_ : (SER4) (TYR55) [view usage] : d.153.1.3 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Penicillin V acylase |automated matches |Bacillus sphaericus [TaxId: 1421]
d4fo7b_ : (PRO211) (THR248) [view usage] : d.127.1.1 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Creatinase/aminopeptidase |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d2rlca_ : (THR3) (THR50) [view usage] : d.153.1.0 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |automated matches |automated matches |Clostridium perfringens [TaxId: 1502]
d1rpia_ : (ARG8) (GLN61) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d3oqda_ : (ARG8) (GLN61) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d1bv9a_ : (ARG8) (ASP60) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d1tjea2 : (PRO170) (ALA224) [view usage] : d.67.1.1 |RRF/tRNA synthetase additional domain-like |ThrRS/AlaRS common domain |Threonyl-tRNA synthetase (ThrRS), second 'additional' domain |Threonyl-tRNA synthetase (ThrRS), second 'additional' domain |Escherichia coli [TaxId: 562]
d2x0sa2 : (ASP500) (ILE530) [view usage] : c.8.1.1 |The "swivelling" beta/beta/alpha domain |Phosphohistidine domain |Pyruvate phosphate dikinase, central domain |Pyruvate phosphate dikinase, central domain |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1gofa1 : (ALA541) (ASP586) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Galactose oxidase, C-terminal domain |Dactylium dendroides [TaxId: 5132]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.93, b.50, b.40, d.153, d.127, b.1, c.8, d.67, b.88, d.26, d.310, b.137