Tableau information
Concept source: d1loma_ amino acid (a.a.) range (ASN10)(ASN86)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN10) (GLY15) E1
(SER16) (THR21) E2
(GLY28) (ASN37) E3
(SER67) (GLU72) E4
(VAL81) (ASN86) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 164.8° E2
E3 -20.6° 173.5° E3
E4 -122.7° 70.9° -102.9° E4
E5 67.5° -99.6° 86.8° 168.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1hpga_ : (GLU89) (GLY160) [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Glutamic acid-specific protease |Streptomyces griseus [TaxId: 1911]
d4j4ca_ : (SER11) (ASN86) [view usage] : b.89.1.1 |Cyanovirin-N |Cyanovirin-N |Cyanovirin-N |Cyanovirin-N |Nostoc ellipsosporum [TaxId: 45916]
d1ww9a1 : (LYS79) (GLY138) [view usage] : b.33.1.2 |ISP domain |ISP domain |Ring hydroxylating alpha subunit ISP domain |Terminal oxygenase component of carbazole CarAa |Janthinobacterium sp. J3 [TaxId: 213804]
d1kq5a_ : (GLU1478) (VAL1521) [view usage] : b.80.5.1 |Single-stranded right-handed beta-helix |C-terminal domain of adenylylcyclase associated protein |C-terminal domain of adenylylcyclase associated protein |C-terminal domain of adenylylcyclase associated protein |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2f5va2 : (GLU432) (PHE504) [view usage] : d.16.1.1 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |GMC oxidoreductases |Pyranose 2-oxidase |White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
d1ffka2 : (ASP44) (GLY83) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |N-terminal domain of ribosomal protein L2 |Haloarcula marismortui [TaxId: 2238]
d2f6ca2 : (GLU432) (PHE504) [view usage] : d.16.1.1 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |GMC oxidoreductases |Pyranose 2-oxidase |White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
d1qzda_ : (GLU215) (THR254) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |70S ribosome functional complex |Escherichia coli [TaxId: 562]
d1kdga2 : (LYS564) (TRP635) [view usage] : d.16.1.1 |FAD-linked reductases, C-terminal domain |FAD-linked reductases, C-terminal domain |GMC oxidoreductases |Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain |Basidomycetes fungus (Phanerochaete chrysosporium) [TaxId: 5306]
d3s3za_ : (ASN10) (ASN86) [view usage] : b.89.1.1 |Cyanovirin-N |Cyanovirin-N |Cyanovirin-N |automated matches |Nostoc ellipsosporum [TaxId: 45916]
d1lgpa_ : (LEU48) (THR99) [view usage] : b.26.1.2 |SMAD/FHA domain |SMAD/FHA domain |FHA domain |Cell cycle checkpoint protein Chfr |Human (Homo sapiens) [TaxId: 9606]
d1lqwa_ : (VAL59) (LEU105) [view usage] : d.167.1.1 |Peptide deformylase |Peptide deformylase |Peptide deformylase |Peptide deformylase |Staphylococcus aureus [TaxId: 1280]
d4mzab_ : (GLY435) (ARG522) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |automated matches |Human parainfluenza 3 virus [TaxId: 11217]
d2ifwa_ : (SER102) (PHE150) [view usage] : b.29.1.20 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Peptidase A4 |automated matches |Fungus (Scytalidium lignicola) [TaxId: 5539]
d1shya_ : (GLN569) (GLY638) [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Hepatocyte growth factor, HGF |Human (Homo sapiens) [TaxId: 9606]
d1cc1l_ : (ASN247) (SER295) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |Nickel-iron hydrogenase, large subunit |Desulfomicrobium baculatum [TaxId: 899]
d1i94l_ : (ARG53) (GLY103) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Ribosomal protein S12 |Thermus thermophilus [TaxId: 274]
d3n40f1 : (LYS160) (PRO224) [view usage] : f.10.1.1 |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |automated matches |Chikungunya virus [TaxId: 37124]
d3n41f1 : (LYS160) (PRO224) [view usage] : f.10.1.1 |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |Viral glycoprotein, central and dimerisation domains |automated matches |Chikungunya virus [TaxId: 37124]
d1gixo_ : (ARG53) (GLY103) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |70S ribosome functional complex |Thermus thermophilus [TaxId: 274]
d1giyh_ : (TYR93) (LYS133) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |70S ribosome functional complex |Thermus thermophilus [TaxId: 274]
d1pyhc_ : (UNK165) (UNK207) [view usage] : i.5.1.1 |Photosystems |Photosystems |Photosystems |RC-LH1 core complex |Rhodopseudomonas palustris [TaxId: 1076]
d1loma_ : (ASN10) (ASN86) [view usage] : b.89.1.1 |Cyanovirin-N |Cyanovirin-N |Cyanovirin-N |Cyanovirin-N |Nostoc ellipsosporum [TaxId: 45916]
d1h8gb_ : (GLY260) (LYS318) [view usage] : b.109.1.1 |beta-hairpin stack |Cell wall binding repeat |Cell wall binding repeat |Choline binding domain of autolysin C-LytA |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1k4za_ : (GLU1478) (VAL1521) [view usage] : b.80.5.1 |Single-stranded right-handed beta-helix |C-terminal domain of adenylylcyclase associated protein |C-terminal domain of adenylylcyclase associated protein |C-terminal domain of adenylylcyclase associated protein |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1is2a3 : (GLY220) (LYS267) [view usage] : e.6.1.2 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |acyl-CoA oxidase N-terminal domains |Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4jyza2 : (LYS407) (ARG474) [view usage] : b.53.1.2 |Ribosomal protein L25-like |Ribosomal protein L25-like |Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain |Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain |Escherichia coli [TaxId: 562]
d2hvpa_ : (VAL11) (ARG57) [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
d2bq8x_ : (ARG108) (ARG153) [view usage] : d.159.1.1 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Purple acid phosphatase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3gcfa1 : (GLU85) (GLY144) [view usage] : b.33.1.0 |ISP domain |ISP domain |automated matches |automated matches |Nocardioides aromaticivorans [TaxId: 200618]
d2j4hb_ : (GLU72) (GLY109) [view usage] : b.85.4.1 |beta-clip |dUTPase-like |dUTPase-like |Deoxycytidine triphosphate deaminase (dCTP deaminase) |Escherichia coli [TaxId: 562]
d1qxwa_ : (SER210) (THR246) [view usage] : d.127.1.1 |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Creatinase/aminopeptidase |Methionine aminopeptidase |Staphylococcus aureus [TaxId: 1280]
d1n0ua1 : (LYS384) (LYS429) [view usage] : b.43.3.1 |Reductase/isomerase/elongation factor common domain |Translation proteins |Elongation factors |Elongation factor 2 (eEF-2), domain II |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3j3az2 : (LYS400) (LYS445) [view usage] : b.43.3.1 |Reductase/isomerase/elongation factor common domain |Translation proteins |Elongation factors |Elongation factor 2 (eEF-2), domain II |Homo sapiens [TaxId: 9606]
d1wgba_ : (HIS96) (ALA134) [view usage] : b.45.1.2 |Split barrel-like |FMN-binding split barrel |NADH:FMN oxidoreductase-like |Putative flavoprotein TTHA0420 |Thermus thermophilus [TaxId: 274]
d1jcha2 : (GLY130) (ASP175) [view usage] : b.110.1.1 |Cloacin translocation domain |Cloacin translocation domain |Cloacin translocation domain |Colicin E3 N-terminal domain |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.80, d.159, i.1, b.29, b.47, b.50, e.18, b.40, e.6, d.127, i.5, b.85, b.45, d.167, b.26, b.109, b.43, d.16, b.33,
f.10, b.89, b.53, b.110