Tableau information
Concept source: d1akja1 amino acid (a.a.) range (THR182)(VAL248)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR182) (ALA193) E1
(HIS197) (SER207) E2
(GLU212) (GLN218) E3
(THR228) (GLY237) E4
(GLY239) (VAL248) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 163.0° E2
E3 -34.5° 156.0° E3
E4 130.1° -32.9° 148.8° E4
E5 -32.8° 163.9° -18.2° 162.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1cdha2 : (PHE98) (GLN148) [view usage] : b.1.1.3 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C2 set domains |CD4 C2-set domains |Human (Homo sapiens) [TaxId: 9606]
d4ouma_ : (GLY1035) (GLN1096) [view usage] : b.22.1.0 |TNF-like |TNF-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1hsba1 : (THR182) (VAL248) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Class I MHC, alpha-3 domain |Human (Homo sapiens) [TaxId: 9606]
d2dm3a_ : (SER5) (PRO72) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1kpra1 : (LEU182) (VAL248) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Class I MHC, alpha-3 domain |Human (Homo sapiens) [TaxId: 9606]
d1dqva1 : (GLY299) (SER369) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Synaptotagmin III |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1n68a1 : (PRO76) (ASP132) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |multi-copper oxidase CueO |Escherichia coli [TaxId: 562]
d1g9mc2 : (PHE98) (GLN148) [view usage] : b.1.1.3 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C2 set domains |CD4 C2-set domains |Human (Homo sapiens) [TaxId: 9606]
d1ddha1 : (THR182) (VAL248) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Class I MHC, alpha-3 domain |Mouse (Mus musculus) [TaxId: 10090]
d1bmga_ : (LYS6) (GLU68) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Cow (Bos taurus) [TaxId: 9913]
d2vzoa2 : (ALA226) (ARG297) [view usage] : b.1.4.0 |Immunoglobulin-like beta-sandwich |beta-Galactosidase/glucuronidase domain |automated matches |automated matches |Amycolatopsis orientalis [TaxId: 31958]
d1a25a_ : (GLY160) (GLN230) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |C2 domain from protein kinase c (beta) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ed3b_ : (ILE1) (GLU69) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1hoca1 : (HIS188) (VAL247) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Class I MHC, alpha-3 domain |Mouse (Mus musculus) [TaxId: 10090]
d2hewf1 : (ASN92) (PHE148) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Tumor necrosis factor ligand superfamily member 4, OX40L |Mouse (Mus musculus) [TaxId: 10090]
d4lcvb_ : (GLY128) (TYR200) [view usage] : b.7.1.0 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3hlaa1 : (THR182) (VAL248) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Class I MHC, alpha-3 domain |Human (Homo sapiens) [TaxId: 9606]
d3qi9a2 : (GLU187) (ASP252) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |CD1, alpha-3 domain |Mouse (Mus musculus) [TaxId: 10090]
d1ibya_ : (GLU38) (PHE83) [view usage] : b.6.1.4 |Cupredoxin-like |Cupredoxins |Nitrosocyanin |Red copper protein nitrosocyanin |Nitrosomonas europaea [TaxId: 915]
d1k5wa_ : (GLY274) (GLU346) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Synaptogamin I |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3qq3b_ : (PHE2) (GLU70) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Pig (Sus scrofa) [TaxId: 9823]
d1zt7a1 : (ASP183) (VAL247) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Class I MHC, alpha-3 domain |Mouse (Mus musculus) [TaxId: 10090]
d1hzva2 : (ALA478) (ASN534) [view usage] : b.70.2.1 |8-bladed beta-propeller |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |Pseudomonas aeruginosa [TaxId: 287]
d1f53a_ : (GLY32) (PRO72) [view usage] : b.11.1.4 |gamma-Crystallin-like |gamma-Crystallin-like |Killer toxin-like protein SKLP |Killer toxin-like protein SKLP |Streptomyces sp. [TaxId: 1931]
d1n67a1 : (GLN253) (PHE319) [view usage] : b.2.3.4 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Fibrinogen-binding domain |Clumping factor A |Staphylococcus aureus [TaxId: 1280]
d1a4kh2 : (SER120) (VAL182) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Human (Homo sapiens) [TaxId: 9606]
d1f3ja1 : (GLU85) (THR152) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Class II MHC alpha chain, C-terminal domain |Mouse (Mus musculus), I-A group [TaxId: 10090]
d2heyf_ : (ASN92) (PHE148) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Tumor necrosis factor ligand superfamily member 4, OX40L |Mouse (Mus musculus) [TaxId: 10090]
d2mhaa1 : (THR182) (SER246) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Class I MHC, alpha-3 domain |Mouse (Mus musculus) [TaxId: 10090]
d4wo4a2 : (VAL185) (LEU249) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1a4jb2 : (LYS123) (THR189) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Human (Homo sapiens) [TaxId: 9606]
d1r24b2 : (SER129) (PRO193) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus), gamma3 [TaxId: 10090]
d2huea1 : (ILE3) (PRO78) [view usage] : b.1.22.1 |Immunoglobulin-like beta-sandwich |ASF1-like |ASF1-like |Anti-silencing protein 1, ASF1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1fp5a2 : (GLU444) (GLU510) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon |Human (Homo sapiens) [TaxId: 9606]
d3l9rb_ : (LYS6) (GLU68) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Cow (Bos taurus) [TaxId: 9913]
d2yf5b_ : (LEU2) (ASP68) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d3nsfa1 : (PRO76) (ASP132) [view usage] : b.6.1.3 |Cupredoxin-like |Cupredoxins |Multidomain cupredoxins |multi-copper oxidase CueO |Escherichia coli [TaxId: 562]
d1z1wa3 : (VAL418) (GLU469) [view usage] : b.1.30.1 |Immunoglobulin-like beta-sandwich |Zn aminopeptidase insert domain |Zn aminopeptidase insert domain |Tricorn protease interacting factor F3 insert domain |Thermoplasma acidophilum [TaxId: 2303]
d3fdwa_ : (THR357) (GLU431) [view usage] : b.7.1.0 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ugka_ : (GLY9) (TYR80) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Synaptotagmin IV |Human (Homo sapiens) [TaxId: 9606]
d2heyg_ : (ASN92) (PHE148) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Tumor necrosis factor ligand superfamily member 4, OX40L |Mouse (Mus musculus) [TaxId: 10090]
d1deeb2 : (THR628) (PRO694) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain mu constant domain 1, CH1-mu |Human (Homo sapiens) [TaxId: 9606]
d4wjka_ : (TYR233) (ALA291) [view usage] : b.69.8.0 |7-bladed beta-propeller |Integrin alpha N-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3f04a_ : (GLY143) (LYS213) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |Synaptogamin I |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, b.69, b.2, b.6, b.1, b.22, b.11, b.7