Tableau information
Concept source: d1va9a1 amino acid (a.a.) range (VAL22)(ASN84)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL22) (THR28) E1
(GLN30) (TRP36) E2
(TYR51) (GLU57) E3
(SER67) (MET71) E4
(ASP76) (ASN84) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 151.3° E2
E3 -57.5° 144.2° E3
E4 102.7° -50.5° 156.2° E4
E5 -43.7° 164.9° -29.8° 142.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3ft1a_ : (ALA1) (SER58) [view usage] : b.7.3.0 |C2 domain-like |PHL pollen allergen |automated matches |automated matches |Timothy grass (Phleum pratense) [TaxId: 15957]
d1rq5a2 : (ASP213) (PHE274) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Cellulose 1,4-beta-cellobiosidase CbhA, precatalytic domain |Clostridium thermocellum [TaxId: 1515]
d1bmwa_ : (VAL1) (GLU57) [view usage] : b.7.3.1 |C2 domain-like |PHL pollen allergen |PHL pollen allergen |PHL P 2 |Timothy grass (Phleum pratense) [TaxId: 15957]
d2moqa_ : (LYS172) (ASN229) [view usage] : b.1.28.0 |Immunoglobulin-like beta-sandwich |NEAT domain-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 196620]
d1xo8a_ : (THR27) (TYR98) [view usage] : b.1.25.1 |Immunoglobulin-like beta-sandwich |LEA14-like |LEA14-like |Putative dessication related protein LEA14 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1cdua1 : (LYS1) (ASN73) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |CD4 V-set domains |Human (Homo sapiens) [TaxId: 9606]
d2z4qb1 : (LYS120) (SER185) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus) [TaxId: 10090]
d3ekca_ : (LYS6) (GLU69) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Human (Homo sapiens) [TaxId: 9606]
d1eh9a1 : (ALA3) (LEU47) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Glycosyltrehalose trehalohydrolase, N-terminal domain N |Sulfolobus solfataricus, km1 [TaxId: 2287]
d1bf2a1 : (GLY8) (VAL61) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Isoamylase, N-terminal domain N |Pseudomonas amyloderamosa [TaxId: 32043]
d1ltxa2 : (CYS247) (ASP303) [view usage] : b.7.4.1 |C2 domain-like |Rab geranylgeranyltransferase alpha-subunit, insert domain |Rab geranylgeranyltransferase alpha-subunit, insert domain |Rab geranylgeranyltransferase alpha-subunit, insert domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2i32a1 : (LYS3) (ASP77) [view usage] : b.1.22.1 |Immunoglobulin-like beta-sandwich |ASF1-like |ASF1-like |Anti-silencing protein 1, ASF1 |Human (Homo sapiens) [TaxId: 9606]
d1wg3a1 : (ILE10) (ASP84) [view usage] : b.1.22.1 |Immunoglobulin-like beta-sandwich |ASF1-like |ASF1-like |Anti-silencing protein 1, ASF1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ds4a_ : (CYS14) (GLU85) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2co3b_ : (ILE44) (LEU89) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |automated matches |Salmonella typhimurium [TaxId: 99287]
d2hczx2 : (LYS147) (THR202) [view usage] : b.7.3.0 |C2 domain-like |PHL pollen allergen |automated matches |automated matches |Maize (Zea mays) [TaxId: 4577]
d2dm4a_ : (GLN15) (ASN69) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4wf8a_ : (PHE1043) (GLN1086) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Hepatitis C virus [TaxId: 11103]
d3ft1c_ : (ALA1) (SER58) [view usage] : b.7.3.0 |C2 domain-like |PHL pollen allergen |automated matches |automated matches |Timothy grass (Phleum pratense) [TaxId: 15957]
d1uc6a_ : (VAL15) (THR72) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Ciliary neurotrophic factor receptor alpha |Human (Homo sapiens) [TaxId: 9606]
d3srga_ : (GLY116) (ALA172) [view usage] : b.68.6.2 |6-bladed beta-propeller |Calcium-dependent phosphotriesterase |Serum paraoxonase/arylesterase 1, PON1 |Serum paraoxonase/arylesterase 1, PON1 |Artificial gene [TaxId: 32630]
d2cu9a1 : (ILE3) (ASP77) [view usage] : b.1.22.1 |Immunoglobulin-like beta-sandwich |ASF1-like |ASF1-like |Anti-silencing protein 1, ASF1 |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d2k78a_ : (ALA57) (SER107) [view usage] : b.1.28.1 |Immunoglobulin-like beta-sandwich |NEAT domain-like |NEAT domain |automated matches |Staphylococcus aureus [TaxId: 196620]
d4av4a_ : (GLN59) (THR110) [view usage] : b.2.3.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Pilus subunits |automated matches |Escherichia coli [TaxId: 364106]
d3keea_ : (PHE43) (GLN86) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Hepatitis C virus [TaxId: 11103]
d3qdaa_ : (LYS6) (GLU69) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |beta2-microglobulin |Human (Homo sapiens) [TaxId: 9606]
d2dzea_ : (ILE3) (ASP77) [view usage] : b.1.22.1 |Immunoglobulin-like beta-sandwich |ASF1-like |ASF1-like |Anti-silencing protein 1, ASF1 |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d3bpob1 : (GLU6) (ASP66) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ax3a_ : (ASP41) (GLY85) [view usage] : b.84.3.1 |Barrel-sandwich hybrid |Duplicated hybrid motif |Glucose permease-like |Glucose permease IIa domain, IIa-glc |Bacillus subtilis [TaxId: 1423]
d1ytpa_ : (ASP1) (PRO51) [view usage] : g.69.1.1 |Plant proteinase inhibitors |Plant proteinase inhibitors |Plant proteinase inhibitors |automated matches |Winged tobacco (Nicotiana alata) [TaxId: 4087]
d1occf_ : (ASN47) (LEU91) [view usage] : g.41.5.3 |Rubredoxin-like |Rubredoxin-like |Cytochrome c oxidase Subunit F |Cytochrome c oxidase Subunit F |Cow (Bos taurus) [TaxId: 9913]
d1cfba1 : (THR621) (PRO680) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Neuroglian, two amino proximal Fn3 repeats |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1he7a_ : (PRO285) (GLY344) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |High affinity nerve growth factor receptor TrkA, different domains |Human (Homo sapiens) [TaxId: 9606]
d2z1aa2 : (GLY244) (THR305) [view usage] : d.159.1.2 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain |Thermus thermophilus [TaxId: 274]
d2y69f_ : (ASN47) (LEU91) [view usage] : g.41.5.3 |Rubredoxin-like |Rubredoxin-like |Cytochrome c oxidase Subunit F |automated matches |Cow (Bos taurus) [TaxId: 9913]
d1n10a1 : (VAL1148) (THR1202) [view usage] : b.7.3.1 |C2 domain-like |PHL pollen allergen |PHL pollen allergen |PHL P 1 C-terminal domain |Timothy grass (Phleum pratense) [TaxId: 15957]
d1rlwa_ : (ASN68) (GLU137) [view usage] : b.7.1.1 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |PLC-like (P variant) |Domain from cytosolic phospholipase A2 |Human (Homo sapiens) [TaxId: 9606]
d1adqh2 : (ALA116) (PRO194) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain mu constant domain 1, CH1-mu |Human (Homo sapiens) [TaxId: 9606]
d1o5dt1 : (THR6) (LEU59) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Extracellular region of human tissue factor |Human (Homo sapiens) [TaxId: 9606]
d1cdha1 : (LYS1) (ASN73) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |CD4 V-set domains |Human (Homo sapiens) [TaxId: 9606]
d1nfaa_ : (PRO46) (GLU111) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |T-cell transcription factor NFAT1 (NFATC), DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d2bhya1 : (GLY26) (LEU71) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Glycosyltrehalose trehalohydrolase, N-terminal domain N |Deinococcus radiodurans [TaxId: 1299]
d1w9sa_ : (GLU52) (GLN112) [view usage] : b.18.1.10 |Galactose-binding domain-like |Galactose-binding domain-like |Family 6 carbohydrate binding module, CBM6 |Hypothetical protein BH0236 |Bacillus halodurans [TaxId: 86665]
d4lpxa_ : (LEU8) (GLY61) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Artificial gene [TaxId: 32630]
d2a73a5 : (TYR433) (THR501) [view usage] : b.1.29.6 |Immunoglobulin-like beta-sandwich |Macroglobulin |Complement C3 MG5-like |Complement C3 MG5 |Human (Homo sapiens) [TaxId: 9606]
d2ka0a_ : (PRO31) (PHE79) [view usage] : b.62.1.3 |Cyclophilin-like |Cyclophilin-like |TM1367-like |automated matches |Thermotoga maritima [TaxId: 2336]
d4nwla_ : (PHE43) (GLN86) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |automated matches |Hepatitis C virus subtype 1a [TaxId: 31646]
d1j2ea1 : (ALA213) (ASN272) [view usage] : b.70.3.1 |8-bladed beta-propeller |DPP6 N-terminal domain-like |DPP6 N-terminal domain-like |Dipeptidyl peptidase IV/CD26, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d4lpwa_ : (LEU2) (GLY61) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Artificial gene [TaxId: 32630]
d2bhua1 : (GLY26) (LEU71) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Glycosyltrehalose trehalohydrolase, N-terminal domain N |Deinococcus radiodurans [TaxId: 1299]
d1dcea2 : (CYS246) (ASP303) [view usage] : b.7.4.1 |C2 domain-like |Rab geranylgeranyltransferase alpha-subunit, insert domain |Rab geranylgeranyltransferase alpha-subunit, insert domain |Rab geranylgeranyltransferase alpha-subunit, insert domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.70, d.159, b.47, b.18, b.2, b.1, b.62, b.84, b.7, g.41, g.69