Protein Concepts Dictionary

Tableau information

Concept source:  d1je9a_  amino acid (a.a.) range (LEU1)(ARG55)

nSSEs in this Concept: 5

String of secondary struct.elems. (SSEs) defining this concept: EEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (LEU1)    (GLN7) E1
	   (ALA11)   (GLY19) E2
	   (ASN22)   (TRP28) E3
	   (GLY33)   (GLY39) E4
	   (VAL49)   (ARG55) E5

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                 
E2      133.5°   E2                          
E3       18.6°  138.1°   E3                   
E4     -148.3°  -31.7°  164.4°   E4            
E5      160.0°  -60.3°  160.6°  -34.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.9°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1je9a_ :     (LEU1)   (ARG55)   [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |Neurotoxin II (Nt2, cobrotoxin B) |Monocled cobra (Naja kaouthia) [TaxId: 8649]
 d1g6ma_ :     (LEU1)   (THR56)   [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |Cobrotoxin II (ct2) |Monocled cobra (Naja kaouthia) [TaxId: 8649]
 d1yi5f1 :     (ILE1)   (SER58)   [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |alpha-Cobratoxin |Cobra (Naja siamensis) [TaxId: 84476]
 d1tfsa_ :     (CYS3)   (CYS52)   [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |FS2 toxin |Black mamba (Dendroaspis polylepis polylepis) [TaxId: 8620]
 d1drsa_ :     (ARG1)   (GLU53)   [view usage] : g.7.1.2 |Snake toxin-like |Snake toxin-like |Dendroaspin |Dendroaspin |Dendroaspis jamesoni kaimosae [TaxId: 8619]
 d1ntna_ :     (ILE1)   (SER59)   [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |Neurotoxin I |Snake (Naja naja oxiana) [TaxId: 8657]
 d1yi5i1 :     (ILE1)   (SER58)   [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |alpha-Cobratoxin |Cobra (Naja siamensis) [TaxId: 84476]
 d1ntxa_ :     (ARG1)   (GLN56)   [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |alpha-Toxin |Black mamba (Dendroaspis polylepis polylepis) [TaxId: 8620]
 d3vtsa_ :     (LEU1)   (ASN56)   [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |automated matches |Hemachatus haemachatus [TaxId: 8626]
 d2jqpa_ :     (THR2)   (SER59)   [view usage] : g.7.1.0 |Snake toxin-like |Snake toxin-like |automated matches |automated matches |Malayan krait (Bungarus candidus) [TaxId: 92438]
 d4iyea_ :     (GLY0)   (LYS59)   [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |automated matches |Green mamba (Dendroaspis angusticeps) [TaxId: 8618]
 d1rl5a_ :     (LEU1)   (ASN55)   [view usage] : g.7.1.1 |Snake toxin-like |Snake toxin-like |Snake venom toxins |automated matches |Naja oxiana [TaxId: 8657]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   g.7