Tableau information
Concept source: d1is3a_ amino acid (a.a.) range (MET15)(LYS77)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(MET15) (ASN26) E1
(ARG29) (GLY35) E2
(ALA42) (HIS47) E3
(VAL57) (HIS65) E4
(GLN71) (LYS77) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 157.9° E2
E3 -36.2° 164.0° E3
E4 117.8° -40.1° 152.2° E4
E5 -72.2° 126.6° -37.4° 154.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1is3a_ : (MET15) (LYS77) [view usage] : b.29.1.3 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Galectin (animal S-lectin) |Congerin II |Conger eel (Conger myriaster) [TaxId: 7943]
d4bp0a_ : (ASP32) (SER76) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1qwdb_ : (SER15) (TYR79) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Outer membrane lipoprotein Blc |Escherichia coli [TaxId: 562]
d2df7b_ : (ASP213) (ALA275) [view usage] : b.121.4.9 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Birnaviridae-like VP |automated matches |Infectious bursal disease virus [TaxId: 10995]
d2rf8a_ : (TYR52) (PRO101) [view usage] : d.153.1.0 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |automated matches |automated matches |Clostridium perfringens [TaxId: 1502]
d2jdla_ : (ILE34) (PHE83) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |automated matches |Mongolian snake-gourd (Trichosanthes kirilowii) [TaxId: 3677]
d1iw7c_ : (GLY145) (PRO192) [view usage] : e.29.1.1 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta |RNA-polymerase beta |Thermus thermophilus [TaxId: 274]
d3bx7c_ : (GLU59) (GLY109) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1hwwa2 : (ASP667) (VAL717) [view usage] : b.30.5.6 |Supersandwich |Galactose mutarotase-like |alpha-mannosidase, C-terminal domain |Golgi alpha-mannosidase II |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1ynjc1 : (GLY145) (PRO192) [view usage] : e.29.1.1 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta |RNA-polymerase beta |Thermus aquaticus [TaxId: 271]
d1lf6a2 : (GLY39) (ASP88) [view usage] : b.30.5.5 |Supersandwich |Galactose mutarotase-like |Bacterial glucoamylase N-terminal domain-like |Bacterial glucoamylase, N-terminal domain |Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]
d1yqfc_ : (GLY45) (GLU106) [view usage] : d.25.1.1 |Mitochondrial glycoprotein MAM33-like |Mitochondrial glycoprotein MAM33-like |Mitochondrial glycoprotein MAM33-like |Hypothetical protein Lmaj011689 |Leishmania major [TaxId: 5664]
d1ekma1 : (SER251) (PHE293) [view usage] : b.30.2.1 |Supersandwich |Amine oxidase catalytic domain |Amine oxidase catalytic domain |Copper amine oxidase, domain 3 |Yeast (Hansenula polymorpha) [TaxId: 4905]
d2wgqa4 : (ASN315) (MET357) [view usage] : b.30.2.1 |Supersandwich |Amine oxidase catalytic domain |Amine oxidase catalytic domain |Copper amine oxidase, domain 3 |Escherichia coli [TaxId: 562]
d2rg2a_ : (TYR52) (PRO101) [view usage] : d.153.1.0 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |automated matches |automated matches |Clostridium perfringens [TaxId: 1502]
d1q88b_ : (SER271) (ASP317) [view usage] : e.47.1.1 |39 kda initiator binding protein, IBP39, C-terminal domains |39 kda initiator binding protein, IBP39, C-terminal domains |39 kda initiator binding protein, IBP39, C-terminal domains |39 kda initiator binding protein, IBP39, C-terminal domains |Trichomonas vaginalis [TaxId: 5722]
d1e3ha2 : (GLU4) (MSE74) [view usage] : d.14.1.4 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |Ribonuclease PH domain 1-like |Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 |Streptomyces antibioticus [TaxId: 1890]
d1ydwa2 : (ARG235) (LEU304) [view usage] : d.81.1.5 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Glucose 6-phosphate dehydrogenase-like |Probable oxidoreductase At4g09670 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1zk9a_ : (ASP310) (GLU369) [view usage] : b.1.18.1 |Immunoglobulin-like beta-sandwich |E set domains |NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3k41b_ : (THR83) (ASP148) [view usage] : b.64.1.1 |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Cation-dependent mannose 6-phosphate receptor, extracytoplasmic domain |Cow (Bos taurus) [TaxId: 9913]
d1xrub_ : (HIS134) (LEU184) [view usage] : b.82.1.13 |Double-stranded beta-helix |RmlC-like cupins |KduI-like |5-keto-4-deoxyuronate isomerase KduI |Escherichia coli [TaxId: 562]
d1qwda_ : (GLU12) (TYR79) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Outer membrane lipoprotein Blc |Escherichia coli [TaxId: 562]
d1opoc_ : (VAL264) (ALA313) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Carmovirus coat protein |CarMV (Carnation mottle virus) [TaxId: 11986]
d1wlda_ : (MET15) (LYS77) [view usage] : b.29.1.3 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Galectin (animal S-lectin) |automated matches |Conger eel (Conger myriaster) [TaxId: 7943]
d4bp0b_ : (ASP32) (SER76) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1o1ua_ : (LYS77) (VAL122) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Ileal lipid-binding protein |Human (Homo sapiens) [TaxId: 9606]
d3i3eb5 : (HIS735) (LEU776) [view usage] : b.30.5.1 |Supersandwich |Galactose mutarotase-like |beta-Galactosidase, domain 5 |beta-Galactosidase, domain 5 |Escherichia coli [TaxId: 562]
d4lhna_ : (THR189) (ASP245) [view usage] : b.179.1.2 |Anthrax protective antigen N-terminal-like |PA14-like |GLEYA domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1wcsa2 : (LYS265) (GLY335) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |Trypanosoma sialidase |Trypanosoma rangeli [TaxId: 5698]
d2f1aa2 : (ASP667) (VAL717) [view usage] : b.30.5.6 |Supersandwich |Galactose mutarotase-like |alpha-mannosidase, C-terminal domain |Golgi alpha-mannosidase II |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2hp4a_ : (LYS56) (LEU112) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1akjd_ : (LYS56) (PHE111) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |CD8 |Human (Homo sapiens) [TaxId: 9606]
d1htya2 : (ASP667) (VAL717) [view usage] : b.30.5.6 |Supersandwich |Galactose mutarotase-like |alpha-mannosidase, C-terminal domain |Golgi alpha-mannosidase II |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1wlca_ : (MET15) (LYS77) [view usage] : b.29.1.3 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Galectin (animal S-lectin) |automated matches |Conger eel (Conger myriaster) [TaxId: 7943]
d1gigh1 : (GLY55) (VAL120) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 5 [TaxId: 10090]
d4bp0c_ : (ASP32) (SER76) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1tg7a2 : (PRO716) (SER774) [view usage] : b.18.1.27 |Galactose-binding domain-like |Galactose-binding domain-like |Beta-galactosidase LacA, domains 4 and 5 |Beta-galactosidase LacA, domains 4 and 5 |Penicillium sp. [TaxId: 5081]
d2rl8b_ : (THR83) (MET147) [view usage] : b.64.1.1 |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Cation-dependent mannose 6-phosphate receptor, extracytoplasmic domain |Cow (Bos taurus) [TaxId: 9913]
d2rlca_ : (TYR52) (PRO101) [view usage] : d.153.1.0 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |automated matches |automated matches |Clostridium perfringens [TaxId: 1502]
d1wioa2 : (ALA182) (VAL238) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |CD4 V-set domains |Human (Homo sapiens) [TaxId: 9606]
d1yu0a1 : (GLU24) (GLY71) [view usage] : b.163.1.1 |Pseudo beta-prism I |Bacteriophage trimeric proteins domain |Mtd domain-like |Major tropism determinant (Mtd), N-terminal domain |Bordetella phage bpp-1 [TaxId: 194699]
d1i6vc_ : (GLY145) (PRO192) [view usage] : e.29.1.1 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta |RNA-polymerase beta |Thermus aquaticus [TaxId: 271]
d1i82a_ : (GLU23) (ASN100) [view usage] : b.1.9.2 |Immunoglobulin-like beta-sandwich |CBD9-like |Family 9 carbohydrate-binding module, CBD9 |Xylanase 10A |Thermotoga maritima [TaxId: 2336]
d1i82a_ : (GLU104) (TRP167) [view usage] : b.1.9.2 |Immunoglobulin-like beta-sandwich |CBD9-like |Family 9 carbohydrate-binding module, CBD9 |Xylanase 10A |Thermotoga maritima [TaxId: 2336]
d1maeh_ : (ASP321) (MET370) [view usage] : b.69.2.1 |7-bladed beta-propeller |YVTN repeat-like/Quinoprotein amine dehydrogenase |Methylamine dehydrogenase, H-chain |Methylamine dehydrogenase, H-chain |Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.82, b.69, b.29, b.30, d.157, d.165, d.153, b.60, b.18, d.14, b.121, d.81, b.1, b.179, d.25, b.64, e.29, e.47, b.163