Tableau information
Concept source: d3mbta_ amino acid (a.a.) range (GLY23)(PHE91)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY23) (ALA29) E1
(THR43) (LEU48) E2
(ASN55) (TYR61) E3
(MET67) (PHE77) E4
(LEU86) (PHE91) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 144.6° E2
E3 -46.7° 168.2° E3
E4 111.8° -36.1° 155.0° E4
E5 -79.1° 118.3° -54.5° 144.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4hmza_ : (GLN45) (ALA103) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Streptomyces bikiniensis [TaxId: 1896]
d3sh4a_ : (TYR6) (SER65) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3tiaa_ : (SER332) (GLY381) [view usage] : b.68.1.1 |6-bladed beta-propeller |Sialidases |Sialidases (neuraminidases) |automated matches |Influenza a virus [TaxId: 382827]
d1kppa_ : (ASP34) (GLY100) [view usage] : d.20.1.2 |UBC-like |UBC-like |UEV domain |Tumor susceptibility gene 101 (TSG101) |Human (Homo sapiens) [TaxId: 9606]
d1b90a1 : (ILE456) (SER515) [view usage] : b.3.1.1 |Prealbumin-like |Starch-binding domain-like |Starch-binding domain |beta-amylase |Bacillus cereus [TaxId: 1396]
d3ckga_ : (ASN28) (VAL79) [view usage] : b.76.1.1 |open-sided beta-meander |Outer surface protein |Outer surface protein |automated matches |Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
d2gtln1 : (GLU160) (LEU225) [view usage] : b.61.7.1 |Streptavidin-like |Extracellular hemoglobin linker subunit, receptor domain |Extracellular hemoglobin linker subunit, receptor domain |Extracellular hemoglobin linker l2 subunit |Common earthworm (Lumbricus terrestris) [TaxId: 6398]
d3vkma1 : (THR31) (ARG88) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2k0ra_ : (GLN72) (PRO126) [view usage] : b.1.17.0 |Immunoglobulin-like beta-sandwich |Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) |automated matches |automated matches |Neisseria meningitidis [TaxId: 491]
d4v19y_ : (HIS94) (SER147) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d2bmib_ : (LYS3) (ASP52) [view usage] : d.157.1.1 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Zn metallo-beta-lactamase |Zn metallo-beta-lactamase |Bacteroides fragilis [TaxId: 817]
d1ka0a_ : (GLU154) (VAL222) [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |3';5'-adenosine bisphosphatase, PAP phosphatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3qkga_ : (SER47) (TYR102) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3r0eb_ : (GLY12) (SER47) [view usage] : b.78.1.0 |beta-Prism II |alpha-D-mannose-specific plant lectins |automated matches |automated matches |Remusatia vivipara [TaxId: 189456]
d2l29a_ : (LYS1579) (HIS1641) [view usage] : b.64.1.1 |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ciya1 : (SER483) (ILE540) [view usage] : b.18.1.3 |Galactose-binding domain-like |Galactose-binding domain-like |delta-Endotoxin, C-terminal domain |delta-Endotoxin, C-terminal domain |Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]
d1w99a3 : (LYS496) (VAL556) [view usage] : b.18.1.3 |Galactose-binding domain-like |Galactose-binding domain-like |delta-Endotoxin, C-terminal domain |delta-Endotoxin, C-terminal domain |Bacillus thuringiensis, Cry4Ba [TaxId: 1428]
d1oaca4 : (ASP20) (GLN58) [view usage] : d.82.1.1 |N domain of copper amine oxidase-like |Copper amine oxidase, domain N |Copper amine oxidase, domain N |Copper amine oxidase, domain N |Escherichia coli [TaxId: 562]
d2l21a_ : (LYS1959) (SER2019) [view usage] : b.64.1.1 |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Cation-independent mannose-6-phosphate receptor (MIR-receptor) |Chicken (Gallus gallus) [TaxId: 9031]
d2nn6i1 : (SER134) (LYS176) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |Exosome component 1, EXOSC1 |Human (Homo sapiens) [TaxId: 9606]
d2xhna1 : (VAL60) (ASN113) [view usage] : b.30.5.10 |Supersandwich |Galactose mutarotase-like |Rhamnogalacturonase B, RhgB, N-terminal domain |automated matches |Fungus (Aspergillus aculeatus) [TaxId: 5053]
d3ckfa_ : (ASN28) (VAL79) [view usage] : b.76.1.1 |open-sided beta-meander |Outer surface protein |Outer surface protein |automated matches |Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
d1rdxa_ : (GLY133) (ASP197) [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |Fructose-1,6-bisphosphatase |Pig (Sus scrofa) [TaxId: 9823]
d1dyoa_ : (ARG35) (VAL95) [view usage] : b.18.1.7 |Galactose-binding domain-like |Galactose-binding domain-like |CBM22 |Xylan-binding domain |Clostridium thermocellum [TaxId: 1515]
d2h0bc_ : (TYR282) (ALA334) [view usage] : b.29.1.4 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Laminin G-like module |Ligand-binding domain of neurexin 1beta |Cow (Bos taurus) [TaxId: 9913]
d1d6ub4 : (ASP20) (GLN58) [view usage] : d.82.1.1 |N domain of copper amine oxidase-like |Copper amine oxidase, domain N |Copper amine oxidase, domain N |Copper amine oxidase, domain N |Escherichia coli [TaxId: 562]
d2ymza_ : (GLY16) (GLN67) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d4p48a1 : (SER6) (SER57) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d2fcua_ : (GLY224) (ILE287) [view usage] : b.82.2.9 |Double-stranded beta-helix |Clavaminate synthase-like |PhyH-like |Syringomycin biosynthesis enzyme 2, SyrB2 |Pseudomonas syringae pv. syringae [TaxId: 321]
d1fj6a_ : (VAL130) (ASP197) [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |Fructose-1,6-bisphosphatase |Pig (Sus scrofa) [TaxId: 9823]
d3muna1 : (LEU320) (PRO365) [view usage] : b.69.7.0 |7-bladed beta-propeller |Peptidase/esterase 'gauge' domain |automated matches |automated matches |Aeromonas punctata [TaxId: 648]
d4es7a_ : (SER40) (VAL96) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1o70a1 : (ILE408) (ASP460) [view usage] : b.118.1.1 |FAS1 domain |FAS1 domain |FAS1 domain |Fasciclin I |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2qvua_ : (VAL130) (ASP197) [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |Fructose-1,6-bisphosphatase |Pig (Sus scrofa) [TaxId: 9823]
d1d6ua4 : (ASP20) (GLN58) [view usage] : d.82.1.1 |N domain of copper amine oxidase-like |Copper amine oxidase, domain N |Copper amine oxidase, domain N |Copper amine oxidase, domain N |Escherichia coli [TaxId: 562]
d1mkfa_ : (ASN67) (SER140) [view usage] : b.116.1.1 |Viral chemokine binding protein m3 |Viral chemokine binding protein m3 |Viral chemokine binding protein m3 |Viral chemokine binding protein m3 |Murid herpesvirus 4, MuHV-4 [TaxId: 33708]
d1yjmc_ : (GLN29) (PRO81) [view usage] : b.26.1.2 |SMAD/FHA domain |SMAD/FHA domain |FHA domain |Polynucleotide kinase 3'-phosphatase |Mouse (Mus musculus) [TaxId: 10090]
d4b7ma_ : (LYS331) (PRO377) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza a virus (a/netherlands/2631/2010(h1n1)) [TaxId: 1027873]
d2ahua2 : (LYS164) (PHE199) [view usage] : c.124.1.2 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase alpha subunit-like |Putative enzyme YdiF N-terminal domain |Escherichia coli [TaxId: 562]
d3mbta_ : (GLY23) (PHE91) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4hmzc_ : (GLN45) (ALA103) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Streptomyces bikiniensis [TaxId: 1896]
d1wzaa1 : (GLY437) (GLY487) [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Bacterial alpha-Amylase |Halothermothrix orenii [TaxId: 31909]
d1ei5a2 : (TYR462) (ARG517) [view usage] : b.61.3.1 |Streptavidin-like |D-aminopeptidase, middle and C-terminal domains |D-aminopeptidase, middle and C-terminal domains |D-aminopeptidase, middle and C-terminal domains |Ochrobactrum anthropi [TaxId: 529]
d2yjha_ : (THR0) (PHE53) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Yersinia pseudotuberculosis [TaxId: 633]
d2ch4w1 : (LYS9) (ASN64) [view usage] : b.40.7.1 |OB-fold |CheW-like |CheW-like |Chemotaxis protein CheW |Thermotoga maritima [TaxId: 2336]
d4jpbw_ : (GLU10) (ASN64) [view usage] : b.40.7.1 |OB-fold |CheW-like |CheW-like |automated matches |Thermotoga maritima [TaxId: 243274]
d1qwra_ : (GLY225) (VAL272) [view usage] : b.82.1.3 |Double-stranded beta-helix |RmlC-like cupins |Type I phosphomannose isomerase |Mannose-6-phosphate isomerase ManA |Bacillus subtilis [TaxId: 1423]
d2jjra_ : (GLU28) (GLY77) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |alpha-Trichosanthin |Mongolian snake gourd (Trichosanthes kirilowii Maxim.) [TaxId: 3677]
d4bifa_ : (SER8) (VAL63) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Granulicella tundricola [TaxId: 1198114]
d2llaa_ : (GLN1557) (SER1617) [view usage] : b.64.1.1 |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |Mannose 6-phosphate receptor domain |automated matches |Australian echidna (Tachyglossus aculeatus) [TaxId: 9261]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.82, b.69, i.1, b.29, b.30, d.157, b.76, c.124, d.165, b.40, c.47, b.60, b.18, e.7, b.1, d.20, b.26, b.61, b.3,
b.71, d.82, b.64, b.116, b.78, b.118