Tableau information
Concept source: d1b56a_ amino acid (a.a.) range (GLN84)(GLU135)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN84) (PHE89) E1
(LEU94) (TRP100) E2
(LYS103) (ARG109) E3
(LEU116) (MET122) E4
(VAL125) (GLU135) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 168.4° E2
E3 -27.2° 164.0° E3
E4 143.1° -25.3° 168.7° E4
E5 -54.8° 136.6° -31.0° 160.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2f73b_ : (VAL82) (LYS125) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Liver fatty acid binding protein |Human (Homo sapiens) [TaxId: 9606]
d1pm7b_ : (GLN47) (LEU102) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-dehydrorhamnose 3,5-epimerase RmlC |Mycobacterium tuberculosis [TaxId: 1773]
d1om9a_ : (LEU513) (PRO574) [view usage] : b.1.10.2 |Immunoglobulin-like beta-sandwich |Clathrin adaptor appendage domain |gamma-adaptin C-terminal appendage domain-like |ADP-ribosylation factor binding protein Gga1 domain |Human (Homo sapiens) [TaxId: 9606]
d1cjdc2 : (ASN259) (PRO321) [view usage] : b.121.2.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Group II dsDNA viruses VP |Coat protein p3 |Coat protein p3 |Bacteriophage PRD1 [TaxId: 10658]
d3stmx_ : (LYS80) (SER124) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Liver fatty acid binding protein |Human (Homo sapiens) [TaxId: 9606]
d3slca1 : (LEU5) (ALA55) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Salmonella enterica [TaxId: 90371]
d3stna_ : (LYS80) (SER124) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Liver fatty acid binding protein |Human (Homo sapiens) [TaxId: 9606]
d4i3da_ : (GLY85) (ARG136) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Eel (Anguilla japonica) [TaxId: 7937]
d1q4ka1 : (SER412) (GLU455) [view usage] : d.223.1.2 |Polo-box domain |Polo-box domain |Polo-box duplicated region |Serine/threonine-protein kinase plk C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1mdca_ : (GLY66) (SER119) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Fatty acid-binding protein |Tobacco hornworm (Manduca sexta) [TaxId: 7130]
d1xsia1 : (GLY696) (ASP749) [view usage] : b.150.1.1 |Putative glucosidase YicI, C-terminal domain |Putative glucosidase YicI, C-terminal domain |Putative glucosidase YicI, C-terminal domain |Putative glucosidase YicI, C-terminal domain |Escherichia coli [TaxId: 562]
d2os3a_ : (VAL71) (LEU125) [view usage] : d.167.1.1 |Peptide deformylase |Peptide deformylase |Peptide deformylase |Peptide deformylase |Streptococcus pyogenes [TaxId: 160490]
d1bgla4 : (HIS739) (LEU776) [view usage] : b.30.5.1 |Supersandwich |Galactose mutarotase-like |beta-Galactosidase, domain 5 |beta-Galactosidase, domain 5 |Escherichia coli [TaxId: 562]
d4i3ba_ : (GLY85) (GLU139) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Eel (Anguilla japonica) [TaxId: 7937]
d1hmra_ : (LYS81) (LYS130) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Muscle fatty acid binding protein (m-fabp) |Human (Homo sapiens) [TaxId: 9606]
d2d6pb_ : (ALA6) (PRO63) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2f73c_ : (GLU77) (SER124) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Liver fatty acid binding protein |Human (Homo sapiens) [TaxId: 9606]
d1kmpa_ : (LYS338) (ARG438) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane transporter FecA |Escherichia coli [TaxId: 562]
d1kmpa_ : (THR440) (GLY549) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Outer membrane transporter FecA |Escherichia coli [TaxId: 562]
d2pora_ : (ALA223) (PHE301) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |Porin |Rhodobacter capsulatus [TaxId: 1061]
d3stka_ : (VAL82) (GLY128) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Liver fatty acid binding protein |Human (Homo sapiens) [TaxId: 9606]
d2o62a1 : (GLN208) (GLU266) [view usage] : b.60.1.9 |Lipocalins |Lipocalins |All1756-like |Uncharacterized protein All1756 ortholog |Nostoc punctiforme [TaxId: 272131]
d4azra_ : (GLN84) (VAL134) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4azmb_ : (GLN84) (GLU135) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2g18d_ : (GLY44) (GLY105) [view usage] : d.248.2.1 |Coproporphyrinogen III oxidase |Ferredoxin-dependent bilin reductase |Ferredoxin-dependent bilin reductase |automated matches |Anabaena sp. [TaxId: 1167]
d3njxa1 : (THR59) (ASN113) [view usage] : b.30.5.10 |Supersandwich |Galactose mutarotase-like |Rhamnogalacturonase B, RhgB, N-terminal domain |Rhamnogalacturonase B, RhgB, N-terminal domain |Fungus (Aspergillus aculeatus) [TaxId: 5053]
d4hn1d_ : (GLN45) (ALA103) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Streptomyces bikiniensis [TaxId: 1896]
d2zpca_ : (GLY37) (TRP80) [view usage] : b.125.1.1 |LolA-like prokaryotic lipoproteins and lipoprotein localization factors |Prokaryotic lipoproteins and lipoprotein localization factors |Outer-membrane lipoproteins carrier protein LolA |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1sa8a_ : (ASP3) (SER46) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Intestinal fatty acid binding protein |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1nkga3 : (THR59) (ASN113) [view usage] : b.30.5.10 |Supersandwich |Galactose mutarotase-like |Rhamnogalacturonase B, RhgB, N-terminal domain |Rhamnogalacturonase B, RhgB, N-terminal domain |Fungus (Aspergillus aculeatus) [TaxId: 5053]
d3sk3b1 : (SER2) (ALA56) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Salmonella enterica [TaxId: 90371]
d4ge1c_ : (CYS42) (THR106) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Rhodnius prolixus [TaxId: 13249]
d1fdqa_ : (LYS81) (LYS130) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Brain fatty acid binding protein |Human (Homo sapiens) [TaxId: 9606]
d1we5a1 : (GLY696) (ASP749) [view usage] : b.150.1.1 |Putative glucosidase YicI, C-terminal domain |Putative glucosidase YicI, C-terminal domain |Putative glucosidase YicI, C-terminal domain |Putative glucosidase YicI, C-terminal domain |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.82, b.29, b.30, f.4, c.55, b.60, b.121, d.248, b.1, b.125, d.167, d.223, b.150