Tableau information
Concept source: d1q1ma_ amino acid (a.a.) range (ASN139)(THR178)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN139) (LEU144) E1
(ILE145) (SER151) E2
(TYR152) (ASN162) E3
(GLN166) (GLU170) E4
(LEU172) (THR178) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -48.4° E2
E3 145.3° -166.0° E3
E4 -36.0° 22.5° 161.4° E4
E5 -60.6° -24.8° 149.5° -46.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1xtna_ : (GLU5) (TYR45) [view usage] : d.189.1.1 |PX domain |PX domain |PX domain |Serine/threonine-protein kinase Sgk3, Cisk |Mouse (Mus musculus) [TaxId: 10090]
d2l9la_ : (GLN16) (GLY77) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3wp6a_ : (GLN12) (ARG61) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Neocallimastix patriciarum [TaxId: 4758]
d3cqoa2 : (GLY226) (GLY289) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Morone saxatilis [TaxId: 34816]
d1c82a3 : (THR632) (LYS674) [view usage] : b.30.5.2 |Supersandwich |Galactose mutarotase-like |Hyaluronate lyase-like, central domain |Hyaluronate lyase |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1jzdc_ : (ASP79) (ASN125) [view usage] : b.1.17.1 |Immunoglobulin-like beta-sandwich |Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) |Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) |Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) |Escherichia coli [TaxId: 562]
d2v1ob_ : (VAL79) (SER124) [view usage] : d.38.1.0 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1g8kb_ : (THR75) (GLY123) [view usage] : b.33.1.1 |ISP domain |ISP domain |Rieske iron-sulfur protein (ISP) |Arsenite oxidase Rieske subunit |Alcaligenes faecalis [TaxId: 511]
d1yhgb_ : (TYR443) (PRO487) [view usage] : d.22.1.1 |GFP-like |GFP-like |Fluorescent proteins |automated matches |Jellyfish (Aequorea victoria) [TaxId: 6100]
d4gnwa_ : (ASN103) (ARG139) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Rhodnius prolixus [TaxId: 13249]
d2ov9c_ : (LEU172) (THR211) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Hypothetical protein RHA1_ro05818 |Rhodococcus sp. RHA1 [TaxId: 101510]
d4kz1a_ : (MET98) (ASN145) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Bartonella grahamii [TaxId: 634504]
d1fcpa_ : (GLY430) (ASP496) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d4meia_ : (MET147) (ASN194) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Bartonella tribocorum [TaxId: 382640]
d1qffa_ : (GLY432) (ASP498) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d2psoa1 : (VAL982) (ASP1021) [view usage] : d.129.3.2 |TBP-like |Bet v1-like |STAR domain |Star-related lipid transfer protein 13 |Human (Homo sapiens) [TaxId: 9606]
d4it7a_ : (GLY54) (SER111) [view usage] : d.17.1.0 |Cystatin-like |Cystatin/monellin |automated matches |automated matches |Ascaris lumbricoides [TaxId: 6252]
d1kn0a_ : (GLY83) (GLY131) [view usage] : d.50.1.3 |dsRBD-like |dsRNA-binding domain-like |The homologous-pairing domain of Rad52 recombinase |The homologous-pairing domain of Rad52 recombinase |Human (Homo sapiens) [TaxId: 9606]
d2asnx_ : (ASN102) (HIS138) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Nitrophorin 2 (prolixin-s) |Rhodnius prolixus [TaxId: 13249]
d4akza_ : (ASN158) (ASN208) [view usage] : d.17.4.26 |Cystatin-like |NTF2-like |VirB8-like |Type IV secretion system protein VirB8 |Brucella melitensis [TaxId: 29459]
d1fi1a_ : (GLY432) (ASP498) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d1jssa_ : (THR100) (VAL139) [view usage] : d.129.3.2 |TBP-like |Bet v1-like |STAR domain |Cholesterol-regulated Start protein 4 (Stard4). |Mouse (Mus musculus) [TaxId: 10090]
d1by3a_ : (GLY421) (ASP487) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d2akja4 : (ARG223) (SER281) [view usage] : d.134.1.1 |Nitrite and sulphite reductase 4Fe-4S domain-like |Nitrite and sulphite reductase 4Fe-4S domain-like |Nitrite and sulphite reductase 4Fe-4S domain-like |Ferredoxin--nitrite reductase, NIR |Spinach (Spinacia oleracea) [TaxId: 3562]
d4lsoa_ : (MET159) (ASN206) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Bartonella quintana [TaxId: 1134506]
d2psob_ : (VAL982) (ASP1021) [view usage] : d.129.3.2 |TBP-like |Bet v1-like |STAR domain |Star-related lipid transfer protein 13 |Human (Homo sapiens) [TaxId: 9606]
d2nqya_ : (GLU1) (ARG49) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |automated matches |Bacillus sp. [TaxId: 1409]
d1em2a_ : (THR315) (ARG355) [view usage] : d.129.3.2 |TBP-like |Bet v1-like |STAR domain |Lipid transport domain of Mln64 |Human (Homo sapiens) [TaxId: 9606]
d1bvqa_ : (ASP75) (ILE116) [view usage] : d.38.1.1 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |4HBT-like |4-hydroxybenzoyl-CoA thioesterase |Pseudomonas sp., CBS-3 [TaxId: 306]
d3o32b_ : (GLY186) (LEU254) [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Chlorocatechol 1,2-dioxygenase |Rhodococcus opacus [TaxId: 37919]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.29, b.30, c.45, d.129, f.4, b.60, b.18, b.1, d.17, d.38, d.134, b.3, b.33, d.50, d.22, d.189