Tableau information
Concept source: d2o4ea1 amino acid (a.a.) range (VAL88)(GLY144)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL88) (LYS94) E1
(VAL100) (SER106) E2
(LEU118) (ARG124) E3
(ALA127) (GLY131) E4
(SER132) (GLY144) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 166.2° E2
E3 -39.1° 144.7° E3
E4 106.9° -79.7° 127.1° E4
E5 128.5° -39.3° 149.0° -81.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ac0a_ : (GLY548) (THR599) [view usage] : b.3.1.1 |Prealbumin-like |Starch-binding domain-like |Starch-binding domain |Glucoamylase, granular starch-binding domain |Aspergillus niger [TaxId: 5061]
d4ldeb_ : (ARG66) (VAL118) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
d1gofa2 : (GLY103) (ALA148) [view usage] : b.18.1.1 |Galactose-binding domain-like |Galactose-binding domain-like |Galactose-binding domain |Galactose oxidase, N-terminal domain |Dactylium dendroides [TaxId: 5132]
d2i9za1 : (THR4) (ALA61) [view usage] : d.366.1.1 |SpoVG-like |SpoVG-like |SpoVG-like |Putative septation protein SpoVG |Staphylococcus epidermidis [TaxId: 1282]
d2jema_ : (LYS116) (ASN164) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Bacillus licheniformis [TaxId: 1402]
d1bcia_ : (SER56) (THR108) [view usage] : b.7.1.1 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |PLC-like (P variant) |Domain from cytosolic phospholipase A2 |Human (Homo sapiens) [TaxId: 9606]
d1pt2a_ : (SER412) (GLU465) [view usage] : b.67.2.2 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Levansucrase |Levansucrase |Bacillus subtilis [TaxId: 1423]
d3b83a_ : (ASP43) (HIS94) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xb9a_ : (THR48) (THR97) [view usage] : b.121.3.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Nucleoplasmin-like core domain |Nucleoplasmin-like core domain |Nucleophosmin (NO38) |African clawed frog (Xenopus laevis) [TaxId: 8355]
d2p4oa1 : (ASN171) (VAL208) [view usage] : b.68.6.3 |6-bladed beta-propeller |Calcium-dependent phosphotriesterase |All0351-like |Hypothetical protein All0351 homologue |Nostoc punctiforme [TaxId: 272131]
d3brda1 : (CYS562) (SER605) [view usage] : b.1.18.1 |Immunoglobulin-like beta-sandwich |E set domains |NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain |DNA-binding protein LAG-1 (CSL) |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1oyga_ : (SER412) (GLU465) [view usage] : b.67.2.2 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Levansucrase |Levansucrase |Bacillus subtilis [TaxId: 1423]
d3om2a_ : (SER422) (GLU475) [view usage] : b.67.2.2 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Levansucrase |Levansucrase |Bacillus megaterium [TaxId: 1404]
d1cjca1 : (SER269) (PRO321) [view usage] : c.3.1.1 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |C-terminal domain of adrenodoxin reductase-like |Adrenodoxin reductase of mitochondrial p450 systems |Cow (Bos taurus) [TaxId: 9913]
d1oa4a_ : (LYS55) (GLY129) [view usage] : b.29.1.11 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Xylanase/endoglucanase 11/12 |Family 12 endo-1,4-beta-glucanase (cellulase) catalytic domain |Streptomyces sp. 11ag8 [TaxId: 133452]
d3byka_ : (SER412) (GLU465) [view usage] : b.67.2.2 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Levansucrase |Levansucrase |Bacillus subtilis [TaxId: 1423]
d1iqaa_ : (GLY203) (GLY265) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |TRANCE/RANKL cytokine |Mouse (Mus musculus) [TaxId: 10090]
d1qleh_ : (ARG67) (SER117) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
d1hoea_ : (THR13) (PRO50) [view usage] : b.5.1.1 |alpha-Amylase inhibitor tendamistat |alpha-Amylase inhibitor tendamistat |alpha-Amylase inhibitor tendamistat |alpha-Amylase inhibitor tendamistat |Streptomyces tendae [TaxId: 1932]
d1jmma_ : (GLN641) (ALA696) [view usage] : b.30.6.1 |Supersandwich |V-region of surface antigen I/II (SA I/II, PAC) |V-region of surface antigen I/II (SA I/II, PAC) |V-region of surface antigen I/II (SA I/II, PAC) |Streptococcus mutans [TaxId: 1309]
d3ujma_ : (SER76) (TYR129) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1m71b1 : (ARG66) (VAL111) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 1 [TaxId: 10090]
d1cwva2 : (GLY646) (THR692) [view usage] : b.1.14.1 |Immunoglobulin-like beta-sandwich |Invasin/intimin cell-adhesion fragments |Invasin/intimin cell-adhesion fragments |Invasin |Yersinia pseudotuberculosis [TaxId: 633]
d3whua_ : (ASP78) (TRP126) [view usage] : b.29.1.13 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Lectin leg-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1k3ia2 : (GLY103) (ALA148) [view usage] : b.18.1.1 |Galactose-binding domain-like |Galactose-binding domain-like |Galactose-binding domain |Galactose oxidase, N-terminal domain |Fungus (Fusarium sp.) [TaxId: 29916]
d4qmaa_ : (PRO87) (PRO133) [view usage] : b.82.1.19 |Double-stranded beta-helix |RmlC-like cupins |Cysteine dioxygenase type I |Cysteine dioxygenase type I |Ralstonia eutropha [TaxId: 106590]
d1cvma_ : (TYR159) (ASN207) [view usage] : b.68.3.1 |6-bladed beta-propeller |Thermostable phytase (3-phytase) |Thermostable phytase (3-phytase) |Thermostable phytase (3-phytase) |Bacillus amyloliquefaciens [TaxId: 1390]
d1hxma1 : (ASN63) (PRO119) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |T-cell antigen receptor |Human (Homo sapiens), gamma-chain [TaxId: 9606]
d1is2a3 : (THR152) (ARG210) [view usage] : e.6.1.2 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |acyl-CoA oxidase N-terminal domains |Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ypzf1 : (MET68) (SER120) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |T-cell antigen receptor |Human (Homo sapiens), gamma-chain [TaxId: 9606]
d3mica1 : (PRO53) (ALA101) [view usage] : b.121.1.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |PHM/PNGase F |Peptidylglycine alpha-hydroxylating monooxygenase, PHM |Peptidylglycine alpha-hydroxylating monooxygenase, PHM |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2bs71_ : (ARG93) (ASN154) [view usage] : b.2.3.5 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |F17c-type adhesin |automated matches |Escherichia coli [TaxId: 562]
d1bwma2 : (LYS11) (TYR50) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |T-cell antigen receptor |Mouse (Mus musculus), beta-chain [TaxId: 10090]
d1pooa_ : (TYR159) (ASN207) [view usage] : b.68.3.1 |6-bladed beta-propeller |Thermostable phytase (3-phytase) |Thermostable phytase (3-phytase) |Thermostable phytase (3-phytase) |Bacillus amyloliquefaciens [TaxId: 1390]
d1l9ma1 : (TRP83) (PHE134) [view usage] : b.1.18.9 |Immunoglobulin-like beta-sandwich |E set domains |Transglutaminase N-terminal domain |Transglutaminase N-terminal domain |Human (Homo sapiens), TGase E3 [TaxId: 9606]
d1ri6a_ : (SER133) (VAL175) [view usage] : b.69.11.1 |7-bladed beta-propeller |Putative isomerase YbhE |Putative isomerase YbhE |Putative isomerase YbhE |Escherichia coli [TaxId: 562]
d3fv3a_ : (ALA73) (GLN110) [view usage] : b.50.1.0 |Acid proteases |Acid proteases |automated matches |automated matches |Candida parapsilosis [TaxId: 5480]
d2jh2c_ : (GLU58) (ARG101) [view usage] : b.2.2.2 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |Cellulose-binding domain family III |automated matches |Clostridium perfringens [TaxId: 1502]
d1hzka_ : (PRO2) (THR54) [view usage] : b.1.7.1 |Immunoglobulin-like beta-sandwich |Actinoxanthin-like |Actinoxanthin-like |Antitumor antibiotic C-1027 |Streptomyces globisporus [TaxId: 1908]
d3byja_ : (SER412) (GLU465) [view usage] : b.67.2.2 |5-bladed beta-propeller |Arabinanase/levansucrase/invertase |Levansucrase |Levansucrase |Bacillus subtilis [TaxId: 1423]
d1gofa1 : (ARG588) (GLN639) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Galactose oxidase, C-terminal domain |Dactylium dendroides [TaxId: 5132]
d1p4ua_ : (SER595) (ALA648) [view usage] : b.1.10.2 |Immunoglobulin-like beta-sandwich |Clathrin adaptor appendage domain |gamma-adaptin C-terminal appendage domain-like |ADP-ribosylation factor binding protein Gga3 domain |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.82, b.69, b.29, b.67, b.30, b.50, e.6, b.18, b.121, b.2, b.1, d.17, b.22, c.3, b.7, b.3, d.366, b.5