Tableau information
Concept source: d1yb3a1 amino acid (a.a.) range (ASN41)(PRO82)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: EEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN41) (TYR45) E1
(LYS49) (TYR55) E2
(TYR55) (LYS63) E3
(GLY65) (PRO72) E4
(TYR76) (PRO82) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 147.8° E2
E3 88.2° -93.2° E3
E4 -76.6° 88.8° 153.6° E4
E5 103.2° -102.8° -51.6° 152.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1c6vx_ : (ASN222) (PRO261) [view usage] : b.34.7.1 |SH3-like barrel |DNA-binding domain of retroviral integrase |DNA-binding domain of retroviral integrase |DNA-binding domain of retroviral integrase |Simian immunodeficiency virus [TaxId: 11723]
d2efia_ : (ARG23) (PRO65) [view usage] : b.34.13.3 |SH3-like barrel |Chromo domain-like |Chromo barrel domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1g8xa_ : (LYS32) (LYS73) [view usage] : k.1.1.1 |Hybrid and chimeric proteins |Hybrid and chimeric proteins |Hybrid and chimeric proteins |Genetically engineered molecular motor |Slime mold (Dictyostelium discoideum) [TaxId: 44689]
d1udya2 : (ASN174) (PRO233) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Medium chain acyl-CoA dehydrogenase, NM domains |Pig (Sus scrofa) [TaxId: 9823]
d1upqa_ : (LEU61) (PRO102) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Phosphoinositol 3-phosphate binding protein-1, PEPP1 |Human (Homo sapiens) [TaxId: 9606]
d1g90a_ : (GLY98) (ARG169) [view usage] : f.4.1.1 |Transmembrane beta-barrels |OMPA-like |Outer membrane protein |Outer membrane protein A (OMPA) transmembrane domain |Escherichia coli [TaxId: 562]
d1c1ab1 : (PRO222) (TRP259) [view usage] : b.34.7.1 |SH3-like barrel |DNA-binding domain of retroviral integrase |DNA-binding domain of retroviral integrase |DNA-binding domain of retroviral integrase |Rous sarcoma virus RSV [TaxId: 11886]
d1f39a_ : (CYS180) (ASN216) [view usage] : b.87.1.1 |LexA/Signal peptidase |LexA/Signal peptidase |LexA-related |lambda repressor C-terminal domain |Bacteriophage lambda [TaxId: 10710]
d4tmza2 : (GLU747) (THR791) [view usage] : b.43.3.0 |Reductase/isomerase/elongation factor common domain |Translation proteins |automated matches |automated matches |Chaetomium thermophilum [TaxId: 209285]
d3pmta_ : (CYS562) (GLU599) [view usage] : b.34.9.1 |SH3-like barrel |Tudor/PWWP/MBT |Tudor domain |Tudor domain-containing protein 3, TDRD3 |Human (Homo sapiens) [TaxId: 9606]
d2dfkc2 : (MET272) (TYR309) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Rho guanine nucleotide exchange factor 9, Collybistin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4rg2b1 : (VAL1491) (ASP1526) [view usage] : b.34.9.1 |SH3-like barrel |Tudor/PWWP/MBT |Tudor domain |p53-binding protein 1, 53BP1 |Human (Homo sapiens) [TaxId: 9606]
d1rx0a2 : (ASP177) (PRO232) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Isobutyryl-CoA dehydrogenase |Human (Homo sapiens) [TaxId: 9606]
d1u5dd_ : (LEU114) (LEU156) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Src kinase-associated phosphoprotein SKAP55 (SCAP1) |Human (Homo sapiens) [TaxId: 9606]
d2jnza_ : (VAL63) (PRO106) [view usage] : b.7.3.0 |C2 domain-like |PHL pollen allergen |automated matches |automated matches |Timothy grass (Phleum pratense) [TaxId: 15957]
d1aela_ : (THR48) (GLY110) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Intestinal fatty acid binding protein |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2aj7b_ : (HIS-1) (SER51) [view usage] : b.158.1.1 |BH3618-like |BH3618-like |BH3618-like |Hypothetical protein BH3618 |Bacillus halodurans [TaxId: 86665]
d1qqha_ : (ASP135) (TYR169) [view usage] : b.91.1.1 |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |E2 regulatory, transactivation domain |Human papillomavirus type 18 [TaxId: 333761]
d4tmzb2 : (GLU747) (THR791) [view usage] : b.43.3.0 |Reductase/isomerase/elongation factor common domain |Translation proteins |automated matches |automated matches |Chaetomium thermophilum [TaxId: 209285]
d1wjsa_ : (LEU20) (ASN60) [view usage] : b.34.9.3 |SH3-like barrel |Tudor/PWWP/MBT |MBT repeat |Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798) |Human (Homo sapiens) [TaxId: 9606]
d2diga1 : (VAL19) (GLU55) [view usage] : b.34.9.1 |SH3-like barrel |Tudor/PWWP/MBT |Tudor domain |Lamin-b receptor |Human (Homo sapiens) [TaxId: 9606]
d1yb3a1 : (ASN41) (PRO82) [view usage] : d.296.1.2 |YktB/PF0168-like |YktB/PF0168-like |PF0168-like |Hypothetical protein PF0168 |Pyrococcus furiosus [TaxId: 2261]
d4e04a1 : (ALA92) (VAL126) [view usage] : d.110.3.0 |Profilin-like |PYP-like sensor domain (PAS domain) |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 258594]
d1pooa_ : (ASN99) (SER143) [view usage] : b.68.3.1 |6-bladed beta-propeller |Thermostable phytase (3-phytase) |Thermostable phytase (3-phytase) |Thermostable phytase (3-phytase) |Bacillus amyloliquefaciens [TaxId: 1390]
d1u27a1 : (LEU266) (GLU307) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |Cytohesin 2 |Mouse (Mus musculus) [TaxId: 10090]
d2a1tc2 : (ASN174) (PRO233) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1f4jc_ : (ALA79) (GLY147) [view usage] : e.5.1.1 |Heme-dependent catalase-like |Heme-dependent catalase-like |Heme-dependent catalases |Catalase I |Human (Homo sapiens) [TaxId: 9606]
d1mm4a_ : (GLY107) (GLU164) [view usage] : f.4.1.2 |Transmembrane beta-barrels |OMPA-like |Outer membrane enzyme PagP |Outer membrane enzyme PagP |Escherichia coli [TaxId: 562]
d2f1ea_ : (GLU72) (SER121) [view usage] : b.1.23.1 |Immunoglobulin-like beta-sandwich |ApaG-like |ApaG-like |ApaG |Xanthomonas axonopodis [TaxId: 92829]
d2aj7a1 : (MSE1) (SER51) [view usage] : b.158.1.1 |BH3618-like |BH3618-like |BH3618-like |Hypothetical protein BH3618 |Bacillus halodurans [TaxId: 86665]
d1baka_ : (GLY563) (MET603) [view usage] : b.55.1.1 |PH domain-like barrel |PH domain-like |Pleckstrin-homology domain (PH domain) |G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, e.5, f.4, e.6, b.60, b.1, d.110, b.55, b.34, b.91, b.7, b.43, b.87, d.296, k.1, b.158